DC900316
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HUL5_YEAST (Probable E3 ubiquitin-protein ligase HUL5 OS=Saccharomyces cerevisiae GN=HUL5 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12 Identity = 41/98 (41.84%), Postives = 51/98 (52.04%), Query Frame = -1 Query: 321 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEG 614 GY I FWEV+ F E+K L+FVT + PL+GF AL KF I A LP+A TC N L P+Y +K L E+LL AI+ G Sbjct: 812 GYKEEDQTIVDFWEVLNEFKFEEKLNFLKFVTSVPQAPLQGFKAL-----DPKFGIRNAGTEKYRLPTASTCVNLLKLPDYRNKTILREKLLYAINSG 904
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HERC4_MOUSE (Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12 Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = -1 Query: 309 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 611 Y A P I+ FWEV E K + L F+TG+ ++P+ G +L K I G +LP +HTCFN LD P+Y K+ L +L+ AI + NEGF Sbjct: 962 YWADHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL-------KLVIQSTGGGESYLPVSHTCFNLLDLPKYTEKETLRCKLIQAI-DHNEGF 1054
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: UPL5_ARATH (E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.396e-11 Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = -1 Query: 306 SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERL-LLAIHEGNEGFG 617 +G+ I WFW++++ ++E++ +L F T VP+EGF L S K I++ Y + D LP +HTCF +L P YP+ +E+RL L+A + FG Sbjct: 772 NGFKETDRQIDWFWKILKKMTEEEQRSILFFWTSNKFVPVEGFRGL-----SSKLYIYRLYEANDRLPLSHTCFYRLCIPRYPTITLMEQRLRLIAQDHVSSSFG 871
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.396e-11 Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = -1 Query: 309 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSID---HLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 614 GY+++SP +++ +++ F +E + LQFVTG+ ++P G ++L S K I + +GS LPS TC N L P Y SK+ ++E+L+ AI EG F Sbjct: 1400 GYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGSPRLPHGGLASL-----SPKLTIVRKHGSDSSDTDLPSVMTCANYLKLPPYSSKEKMKEKLIYAITEGQGSF 1499
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11 Identity = 34/102 (33.33%), Postives = 54/102 (52.94%), Query Frame = -1 Query: 309 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 614 GY+ S +++ +E++ F E + LQFVTG+ ++P+ GF +L + D LPS TC N L P+Y S + + E+LL+A EG + F Sbjct: 1888 GYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIAAREGQQSF 1989 The following BLAST results are available for this feature:
BLAST of DC900316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900316 ID=DC900316; Name=DC900316; organism=Citrus sinensis; type=EST; length=632bpback to top |