DC900316

Overview
NameDC900316
Unique NameDC900316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HUL5_YEAST (Probable E3 ubiquitin-protein ligase HUL5 OS=Saccharomyces cerevisiae GN=HUL5 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12
Identity = 41/98 (41.84%), Postives = 51/98 (52.04%), Query Frame = -1
Query:  321 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEG 614
            GY      I  FWEV+  F  E+K   L+FVT   + PL+GF AL       KF I  A      LP+A TC N L  P+Y +K  L E+LL AI+ G
Sbjct:  812 GYKEEDQTIVDFWEVLNEFKFEEKLNFLKFVTSVPQAPLQGFKAL-----DPKFGIRNAGTEKYRLPTASTCVNLLKLPDYRNKTILREKLLYAINSG 904          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HERC4_MOUSE (Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = -1
Query:  309 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 611
            Y A  P I+ FWEV      E K + L F+TG+ ++P+ G  +L       K  I    G   +LP +HTCFN LD P+Y  K+ L  +L+ AI + NEGF
Sbjct:  962 YWADHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL-------KLVIQSTGGGESYLPVSHTCFNLLDLPKYTEKETLRCKLIQAI-DHNEGF 1054          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: UPL5_ARATH (E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.396e-11
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = -1
Query:  306 SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERL-LLAIHEGNEGFG 617
            +G+      I WFW++++  ++E++  +L F T    VP+EGF  L     S K  I++ Y + D LP +HTCF +L  P YP+   +E+RL L+A    +  FG
Sbjct:  772 NGFKETDRQIDWFWKILKKMTEEEQRSILFFWTSNKFVPVEGFRGL-----SSKLYIYRLYEANDRLPLSHTCFYRLCIPRYPTITLMEQRLRLIAQDHVSSSFG 871          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.396e-11
Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = -1
Query:  309 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSID---HLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 614
            GY+++SP +++  +++  F +E +   LQFVTG+ ++P  G ++L     S K  I + +GS      LPS  TC N L  P Y SK+ ++E+L+ AI EG   F
Sbjct: 1400 GYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGSPRLPHGGLASL-----SPKLTIVRKHGSDSSDTDLPSVMTCANYLKLPPYSSKEKMKEKLIYAITEGQGSF 1499          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 34/102 (33.33%), Postives = 54/102 (52.94%), Query Frame = -1
Query:  309 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 614
            GY+  S  +++ +E++  F  E +   LQFVTG+ ++P+ GF +L       +          D LPS  TC N L  P+Y S + + E+LL+A  EG + F
Sbjct: 1888 GYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIAAREGQQSF 1989          
The following BLAST results are available for this feature:
BLAST of DC900316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
HUL5_YEAST8.182e-1241.84Probable E3 ubiquitin-protein ligase HUL5 OS=Sacch... [more]
HERC4_MOUSE8.182e-1239.60Probable E3 ubiquitin-protein ligase HERC4 OS=Mus ... [more]
UPL5_ARATH1.396e-1135.24E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis th... [more]
UPL4_ARATH1.396e-1136.19E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis th... [more]
TRIPC_HUMAN6.927e-1133.33Probable E3 ubiquitin-protein ligase TRIP12 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionDC900316 VSS Citrus sinensis cDNA clone VS28665 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900316 ID=DC900316; Name=DC900316; organism=Citrus sinensis; type=EST; length=632bp
AAGAAACAATTGATTTGATTATCCAGAAATTTTATTTTTCTTGGACAAGG
ATGGCATAAATCACCAAATGTTGAAATCAAAAAGGGAAAAAGAATTTGCA
AAAATAAAGGGCAGATTGGCAAATTTTAAAACTGCCATGATAATTTTCAA
TAGCCAATATATGCTGTACAGTATATAAACATGTTTTGACTTGAAATGTG
ACATCCACCCTTTTACCCATTTCCTCTCCCATTGCAGCTTTTGAGATAAT
ATATATATTTTTATCTACACTACTCTGGAGAAATAGCCAATTTTACTTAA
CCAAATCCAAACCCTTCATTGCCTTCATGAATTGCAAGCAGCAGTCTCTC
CTCTAGATGCTGCTTAGAAGGATATTCCGGCCAATCTAATTGATTGAAAC
AAGTATGAGCAGAAGGCAAATGATCTATGCTGCCATATGCCTTGTGTATT
TGAAACTTCTGTGAACCTGAAATTCCTTGAAGTGCACTGAAACCTTCCAA
GGGCACCTTTGAGGTGCCAGTCACAAACTGCAGAAGACGAGCCTTATCCT
CCTTGCTGAACCCTTGAACAACCTCCCAAAACCACTGGATAACAGGAGAT
GCAGCACTATATCCAGATATTCCGGATTTGCC
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