CX043655
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A_CHAGB (Histone H2A OS=Chaetomium globosum GN=HTA1 PE=3 SV=2) HSP 1 Score: 144.436 bits (363), Expect = 5.165e-34 Identity = 77/124 (62.10%), Postives = 87/124 (70.16%), Query Frame = 2 Query: 50 TKGGR--GKPKSTKSI-SRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 412 T GG+ GK +K+ SRS KAGL FPVGR+ R L+ G YA RVGAGAP GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLP+K GK Sbjct: 2 TGGGKSGGKASGSKNAQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGK 125
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2AX_TETTH (Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 PE=1 SV=2) HSP 1 Score: 144.436 bits (363), Expect = 5.165e-34 Identity = 77/138 (55.80%), Postives = 93/138 (67.39%), Query Frame = 2 Query: 32 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 445 MS+ G +GK S+K +SRS +AGLQFPVGRI+RFLK G+Y++RVG GAP GNAA+DNKK RIVPRHI LA+RNDEEL+KL+ TIA+GGVLPNI+ LLP K K E G ASQ+ Sbjct: 1 MSTTGKGGKAKGKTASSKQVSRSARAGLQFPVGRISRFLKHGRYSERVGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSK-SKKTESRGQASQD 137
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A2_PICST (Histone H2A.2 OS=Pichia stipitis GN=HTA2 PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 5.165e-34 Identity = 79/132 (59.85%), Postives = 91/132 (68.94%), Query Frame = 2 Query: 56 GGRGKPKSTK--SISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 445 GG+GK S++ S SRS KAGL FPVGR+ R L+ G YA RVG+GAP GNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ+LLP K K G ASQE Sbjct: 3 GGKGKAGSSEKASTSRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLLPAKKAKP----GKASQE 130
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2AX_TETPY (Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE=1 SV=2) HSP 1 Score: 144.05 bits (362), Expect = 6.746e-34 Identity = 76/138 (55.07%), Postives = 93/138 (67.39%), Query Frame = 2 Query: 32 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 445 MS+ G +GK S+K +SRS +AGLQFPVGRI+RFLK G+Y++R+G GAP GNAA+DNKK RIVPRHI LA+RNDEEL+KL+ TIA+GGVLPNI+ LLP K K E G ASQ+ Sbjct: 1 MSTTGKGGKAKGKTASSKQVSRSARAGLQFPVGRISRFLKHGRYSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSK-SKKTESRGQASQD 137
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A_USTMA (Histone H2A OS=Ustilago maydis GN=HTA1 PE=3 SV=3) HSP 1 Score: 143.665 bits (361), Expect = 8.810e-34 Identity = 76/132 (57.58%), Postives = 89/132 (67.42%), Query Frame = 2 Query: 38 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGS 433 S+G GG+ S+K+ SRS KAGLQFPVGRI R L+ G YA RVGAGAP GNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTI+ GGVLP I LLP K GK ++ GS Sbjct: 2 SSGGKSGGKAGDASSKAQSRSAKAGLQFPVGRIHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGGVTISQGGVLPFIQSELLPAKSGKPKKAGGS 133
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A_AGABI (Histone H2A OS=Agaricus bisporus PE=2 SV=3) HSP 1 Score: 143.665 bits (361), Expect = 8.810e-34 Identity = 81/139 (58.27%), Postives = 90/139 (64.75%), Query Frame = 2 Query: 32 MSSAGSTKGGRGKPKS-TKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 445 MS G GK S TKS+SRS KAGLQFPVGR+ R LK G YA RVGAGAP GNAARDNKK RIVPRH+QLA+RNDEEL KLLG V I+ GGV+P+I LLP K KG++D G SQE Sbjct: 1 MSGKGKAGKSGGKAGSETKSMSRSSKAGLQFPVGRVHRLLKKGNYAQRVGAGAPVYMAAVLEYLAAEILELAGNAARDNKKQRIVPRHLQLAIRNDEELHKLLGNVVISQGGVVPHIAPELLPSKSSKGKKDEG-VSQE 138
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A1_YEAST (Histone H2A.1 OS=Saccharomyces cerevisiae GN=HTA1 PE=1 SV=2) HSP 1 Score: 143.665 bits (361), Expect = 8.810e-34 Identity = 75/131 (57.25%), Postives = 88/131 (67.18%), Query Frame = 2 Query: 53 KGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 445 KGG+ + S SRS KAGL FPVGR+ R L+ G YA R+G+GAP GNAARDNKK RI+PRH+QLA+RND+EL+KLLG VTIA GGVLPNIHQNLLP+K K + ASQE Sbjct: 5 KGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAKATK----ASQE 131
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A2_YEAST (Histone H2A.2 OS=Saccharomyces cerevisiae GN=HTA2 PE=1 SV=2) HSP 1 Score: 143.28 bits (360), Expect = 1.151e-33 Identity = 75/131 (57.25%), Postives = 87/131 (66.41%), Query Frame = 2 Query: 53 KGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 445 KGG+ + S SRS KAGL FPVGR+ R L+ G YA R+G+GAP GNAARDNKK RI+PRH+QLA+RND+EL+KLLG VTIA GGVLPNIHQNLLP+K K ASQE Sbjct: 5 KGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK----TAKASQE 131
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A1_CANGA (Histone H2A.1 OS=Candida glabrata GN=HTA1 PE=3 SV=3) HSP 1 Score: 143.28 bits (360), Expect = 1.151e-33 Identity = 75/131 (57.25%), Postives = 89/131 (67.94%), Query Frame = 2 Query: 53 KGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 445 KGG+ + S +RS KAGL FPVGR+ R L+ G YA R+G+GAP GNAARDNKK+RI+PRH+QLA+RND+EL+KLLG VTIA GGVLPNIHQNLLP+K K SASQE Sbjct: 5 KGGKAGSAAKASQTRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK-----PSASQE 130
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A_PODAN (Histone H2A OS=Podospora anserina GN=HTA1 PE=3 SV=3) HSP 1 Score: 142.895 bits (359), Expect = 1.503e-33 Identity = 77/123 (62.60%), Postives = 86/123 (69.92%), Query Frame = 2 Query: 50 TKGGR--GKPKSTKSI-SRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMG 409 T GG+ GK S K+ SRS KAGL FPVGR+ R L+ G YA RVGAGAP GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLP+K G Sbjct: 2 TGGGKSGGKASSGKNAQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTG 124 The following BLAST results are available for this feature:
BLAST of CX043655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043655 ID=CX043655; Name=CX043655; organism=Citrus sinensis; type=EST; length=682bpback to top |