CX043655

Overview
NameCX043655
Unique NameCX043655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A_CHAGB (Histone H2A OS=Chaetomium globosum GN=HTA1 PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.165e-34
Identity = 77/124 (62.10%), Postives = 87/124 (70.16%), Query Frame = 2
Query:   50 TKGGR--GKPKSTKSI-SRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 412
            T GG+  GK   +K+  SRS KAGL FPVGR+ R L+ G YA RVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLP+K GK
Sbjct:    2 TGGGKSGGKASGSKNAQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGK 125          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2AX_TETTH (Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.165e-34
Identity = 77/138 (55.80%), Postives = 93/138 (67.39%), Query Frame = 2
Query:   32 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 445
            MS+ G     +GK  S+K +SRS +AGLQFPVGRI+RFLK G+Y++RVG GAP                  GNAA+DNKK RIVPRHI LA+RNDEEL+KL+   TIA+GGVLPNI+  LLP K  K  E  G ASQ+
Sbjct:    1 MSTTGKGGKAKGKTASSKQVSRSARAGLQFPVGRISRFLKHGRYSERVGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSK-SKKTESRGQASQD 137          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A2_PICST (Histone H2A.2 OS=Pichia stipitis GN=HTA2 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.165e-34
Identity = 79/132 (59.85%), Postives = 91/132 (68.94%), Query Frame = 2
Query:   56 GGRGKPKSTK--SISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 445
            GG+GK  S++  S SRS KAGL FPVGR+ R L+ G YA RVG+GAP                  GNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ+LLP K  K     G ASQE
Sbjct:    3 GGKGKAGSSEKASTSRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLLPAKKAKP----GKASQE 130          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2AX_TETPY (Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 6.746e-34
Identity = 76/138 (55.07%), Postives = 93/138 (67.39%), Query Frame = 2
Query:   32 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 445
            MS+ G     +GK  S+K +SRS +AGLQFPVGRI+RFLK G+Y++R+G GAP                  GNAA+DNKK RIVPRHI LA+RNDEEL+KL+   TIA+GGVLPNI+  LLP K  K  E  G ASQ+
Sbjct:    1 MSTTGKGGKAKGKTASSKQVSRSARAGLQFPVGRISRFLKHGRYSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSK-SKKTESRGQASQD 137          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A_USTMA (Histone H2A OS=Ustilago maydis GN=HTA1 PE=3 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 8.810e-34
Identity = 76/132 (57.58%), Postives = 89/132 (67.42%), Query Frame = 2
Query:   38 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGS 433
            S+G   GG+    S+K+ SRS KAGLQFPVGRI R L+ G YA RVGAGAP                  GNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTI+ GGVLP I   LLP K GK ++  GS
Sbjct:    2 SSGGKSGGKAGDASSKAQSRSAKAGLQFPVGRIHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGGVTISQGGVLPFIQSELLPAKSGKPKKAGGS 133          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A_AGABI (Histone H2A OS=Agaricus bisporus PE=2 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 8.810e-34
Identity = 81/139 (58.27%), Postives = 90/139 (64.75%), Query Frame = 2
Query:   32 MSSAGSTKGGRGKPKS-TKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 445
            MS  G      GK  S TKS+SRS KAGLQFPVGR+ R LK G YA RVGAGAP                  GNAARDNKK RIVPRH+QLA+RNDEEL KLLG V I+ GGV+P+I   LLP K  KG++D G  SQE
Sbjct:    1 MSGKGKAGKSGGKAGSETKSMSRSSKAGLQFPVGRVHRLLKKGNYAQRVGAGAPVYMAAVLEYLAAEILELAGNAARDNKKQRIVPRHLQLAIRNDEELHKLLGNVVISQGGVVPHIAPELLPSKSSKGKKDEG-VSQE 138          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A1_YEAST (Histone H2A.1 OS=Saccharomyces cerevisiae GN=HTA1 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.810e-34
Identity = 75/131 (57.25%), Postives = 88/131 (67.18%), Query Frame = 2
Query:   53 KGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 445
            KGG+    +  S SRS KAGL FPVGR+ R L+ G YA R+G+GAP                  GNAARDNKK RI+PRH+QLA+RND+EL+KLLG VTIA GGVLPNIHQNLLP+K  K  +    ASQE
Sbjct:    5 KGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAKATK----ASQE 131          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A2_YEAST (Histone H2A.2 OS=Saccharomyces cerevisiae GN=HTA2 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.151e-33
Identity = 75/131 (57.25%), Postives = 87/131 (66.41%), Query Frame = 2
Query:   53 KGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 445
            KGG+    +  S SRS KAGL FPVGR+ R L+ G YA R+G+GAP                  GNAARDNKK RI+PRH+QLA+RND+EL+KLLG VTIA GGVLPNIHQNLLP+K  K       ASQE
Sbjct:    5 KGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK----TAKASQE 131          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A1_CANGA (Histone H2A.1 OS=Candida glabrata GN=HTA1 PE=3 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.151e-33
Identity = 75/131 (57.25%), Postives = 89/131 (67.94%), Query Frame = 2
Query:   53 KGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 445
            KGG+    +  S +RS KAGL FPVGR+ R L+ G YA R+G+GAP                  GNAARDNKK+RI+PRH+QLA+RND+EL+KLLG VTIA GGVLPNIHQNLLP+K  K      SASQE
Sbjct:    5 KGGKAGSAAKASQTRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK-----PSASQE 130          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A_PODAN (Histone H2A OS=Podospora anserina GN=HTA1 PE=3 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.503e-33
Identity = 77/123 (62.60%), Postives = 86/123 (69.92%), Query Frame = 2
Query:   50 TKGGR--GKPKSTKSI-SRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMG 409
            T GG+  GK  S K+  SRS KAGL FPVGR+ R L+ G YA RVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLP+K G
Sbjct:    2 TGGGKSGGKASSGKNAQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTG 124          
The following BLAST results are available for this feature:
BLAST of CX043655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A_CHAGB5.165e-3462.10Histone H2A OS=Chaetomium globosum GN=HTA1 PE=3 SV... [more]
H2AX_TETTH5.165e-3455.80Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 P... [more]
H2A2_PICST5.165e-3459.85Histone H2A.2 OS=Pichia stipitis GN=HTA2 PE=3 SV=1[more]
H2AX_TETPY6.746e-3455.07Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE... [more]
H2A_USTMA8.810e-3457.58Histone H2A OS=Ustilago maydis GN=HTA1 PE=3 SV=3[more]
H2A_AGABI8.810e-3458.27Histone H2A OS=Agaricus bisporus PE=2 SV=3[more]
H2A1_YEAST8.810e-3457.25Histone H2A.1 OS=Saccharomyces cerevisiae GN=HTA1 ... [more]
H2A2_YEAST1.151e-3357.25Histone H2A.2 OS=Saccharomyces cerevisiae GN=HTA2 ... [more]
H2A1_CANGA1.151e-3357.25Histone H2A.1 OS=Candida glabrata GN=HTA1 PE=3 SV=... [more]
H2A_PODAN1.503e-3362.60Histone H2A OS=Podospora anserina GN=HTA1 PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12F01_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12F01-K2-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043655 ID=CX043655; Name=CX043655; organism=Citrus sinensis; type=EST; length=682bp
CAAGAGAGCATTTGCATTATTTTGTCAATCGATGAGCTCCGCAGGATCAA
CGAAGGGCGGCAGAGGCAAGCCCAAGTCGACCAAATCAATTTCCAGATCT
CACAAGGCTGGCCTTCAGTTCCCCGTCGGCCGTATTGCTCGCTTCCTCAA
AGCCGGAAAGTACGCCGATCGCGTGGGTGCCGGCGCCCCCGTCTACCTAT
CGGCTGTTCTTGAATACCTTGCTGCTGAGGTTTTGGAGCTTGCTGGCAAT
GCTGCAAGGGATAACAAAAAGAACCGTATCGTTCCAAGGCACATTCAACT
AGCTGTGAGGAATGATGAAGAATTAAGCAAGCTTTTGGGCACAGTTACTA
TTGCAAATGGAGGAGTTCTGCCAAACATTCATCAGAACCTGTTGCCAAGG
AAAATGGGCAAAGGAAGGGAGGATATTGGATCTGCTTCGCAAGAATTTTA
GTGCTGAAACTTCTCTGCTTGTTGAATTTGAATACTTAAAAAAAAAAAAA
ATGCAGGATTGATTGATTTACGCAATTTTTTTCTTTATTTGTGATCCTTT
TATCTCCGTGTAAACTGGGATTTGGGTTCCGGCCGAATATAGTGAAACAA
TAATTTTTTGATGTCCCATCTCATTGTGTGGGGGTTTAAAGTTAGCAACA
ATGAAGTTGGTTTGCATTAAAAAAAAAAAAAA
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