CX043655

Overview
NameCX043655
Unique NameCX043655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A_ASPFU (Histone H2A OS=Aspergillus fumigatus GN=hta1 PE=3 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 7.458e-33
Identity = 74/123 (60.16%), Postives = 83/123 (67.48%), Query Frame = 2
Query:   44 GSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 412
            G   GG+    S  + SRS KAGL FPVGR+ R L+ G YA RVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLP+K  K
Sbjct:    3 GGKSGGKASG-SKNAQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPK 124          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A_ASPCL (Histone H2A OS=Aspergillus clavatus GN=hta1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.458e-33
Identity = 74/123 (60.16%), Postives = 83/123 (67.48%), Query Frame = 2
Query:   44 GSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 412
            G   GG+    S  + SRS KAGL FPVGR+ R L+ G YA RVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLP+K  K
Sbjct:    3 GGKSGGKASG-SKNAQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPK 124          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A1_TETPY (Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 7.458e-33
Identity = 72/130 (55.38%), Postives = 88/130 (67.69%), Query Frame = 2
Query:   32 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGRE 421
            MS+ G     +GK  S+K +SRS +AGLQFPVGRI+RFLK G+Y++R+G GAP                  GNAA+DNKK RIVPRHI LA+RNDEEL+KL+   TIA+GGVLPNI+  LLP K  K  E
Sbjct:    1 MSTTGKGGKAKGKTASSKQVSRSARAGLQFPVGRISRFLKNGRYSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKTKKTSE 130          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A7_ARATH (Probable histone H2A.7 OS=Arabidopsis thaliana GN=At5g59870 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.741e-33
Identity = 78/130 (60.00%), Postives = 89/130 (68.46%), Query Frame = 2
Query:   32 MSSAGSTK---GGR---GKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRK 403
            M S G  K   GGR   G PK TKS+S+S KAGLQFPVGRI RFLK G+YA R+G GAP                  GNAARDNKK+RI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLP+K
Sbjct:    1 MESTGKVKKAFGGRKPPGAPK-TKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKK 129          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A1_MEDTR (Probable histone H2A.1 OS=Medicago truncatula GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.741e-33
Identity = 77/139 (55.40%), Postives = 90/139 (64.75%), Query Frame = 2
Query:   26 QSMSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQ 442
            ++   AG  KGG  K    KS++RS +AGLQFPVGRI R+LK G+YA RVG GAP                  GNAARDNKKNRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLP+K  K      S S+
Sbjct:    6 KTKKGAGGRKGGPRK----KSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKNEKAATTTKSPSK 140          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A_CRYNE (Histone H2A OS=Cryptococcus neoformans GN=HTA1 PE=3 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.662e-32
Identity = 80/133 (60.15%), Postives = 91/133 (68.42%), Query Frame = 2
Query:   50 TKGGRGKPKS-TKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 445
            + GG+GK  S TKS SRS KAGLQFPVGRI R LK G YA R+G+GAP                  GNAARDNKK+RIVPRH+QLAVRNDEEL+KLLG+V I+ GGVLP+I   LLP K  KG+     ASQE
Sbjct:    2 SSGGKGKASSETKSSSRSSKAGLQFPVGRIHRLLKKGNYAQRIGSGAPVYLAAVLEYLAAEILELAGNAARDNKKSRIVPRHLQLAVRNDEELNKLLGSVVISQGGVLPHIMAELLPVKT-KGK---AKASQE 130          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A4_PSAMI (Late histone H2A.2.2 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.662e-32
Identity = 71/115 (61.74%), Postives = 83/115 (72.17%), Query Frame = 2
Query:   59 GRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRK 403
            G+G    +K+ SRS +AGLQFPVGR+ RFL+ G YA+RVGAGAP                  GNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLP+K
Sbjct:    5 GKGAKSKSKAKSRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 119          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.170e-32
Identity = 71/117 (60.68%), Postives = 82/117 (70.09%), Query Frame = 2
Query:   59 GRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMG 409
            G+G     K+ SRS +AGLQFPVGR+ RFL+ G YA+RVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLP+K G
Sbjct:    5 GKGAKAKGKAKSRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTG 121          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.170e-32
Identity = 75/138 (54.35%), Postives = 91/138 (65.94%), Query Frame = 2
Query:   32 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 445
            MS  G T GG+ + K+    +RS +AGLQFPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKK RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLP+K G+     G + ++
Sbjct:    1 MSGRGKT-GGKARAKAK---TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGQAAASSGKSGKK 134          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A3_PSAMI (Late histone H2A.3, gonadal OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.170e-32
Identity = 71/117 (60.68%), Postives = 82/117 (70.09%), Query Frame = 2
Query:   59 GRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMG 409
            G+G     K+ SRS +AGLQFPVGR+ RFL+ G YA+RVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLP+K G
Sbjct:    5 GKGAKAKGKAKSRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTG 121          
The following BLAST results are available for this feature:
BLAST of CX043655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A_ASPFU7.458e-3360.16Histone H2A OS=Aspergillus fumigatus GN=hta1 PE=3 ... [more]
H2A_ASPCL7.458e-3360.16Histone H2A OS=Aspergillus clavatus GN=hta1 PE=3 S... [more]
H2A1_TETPY7.458e-3355.38Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE... [more]
H2A7_ARATH9.741e-3360.00Probable histone H2A.7 OS=Arabidopsis thaliana GN=... [more]
H2A1_MEDTR9.741e-3355.40Probable histone H2A.1 OS=Medicago truncatula GN=M... [more]
H2A_CRYNE1.662e-3260.15Histone H2A OS=Cryptococcus neoformans GN=HTA1 PE=... [more]
H2A4_PSAMI1.662e-3261.74Late histone H2A.2.2 OS=Psammechinus miliaris PE=3... [more]
H2A_PARAN2.170e-3260.68Histone H2A, gonadal OS=Parechinus angulosus PE=1 ... [more]
H2AX_DANRE2.170e-3254.35Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3[more]
H2A3_PSAMI2.170e-3260.68Late histone H2A.3, gonadal OS=Psammechinus miliar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12F01_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12F01-K2-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043655 ID=CX043655; Name=CX043655; organism=Citrus sinensis; type=EST; length=682bp
CAAGAGAGCATTTGCATTATTTTGTCAATCGATGAGCTCCGCAGGATCAA
CGAAGGGCGGCAGAGGCAAGCCCAAGTCGACCAAATCAATTTCCAGATCT
CACAAGGCTGGCCTTCAGTTCCCCGTCGGCCGTATTGCTCGCTTCCTCAA
AGCCGGAAAGTACGCCGATCGCGTGGGTGCCGGCGCCCCCGTCTACCTAT
CGGCTGTTCTTGAATACCTTGCTGCTGAGGTTTTGGAGCTTGCTGGCAAT
GCTGCAAGGGATAACAAAAAGAACCGTATCGTTCCAAGGCACATTCAACT
AGCTGTGAGGAATGATGAAGAATTAAGCAAGCTTTTGGGCACAGTTACTA
TTGCAAATGGAGGAGTTCTGCCAAACATTCATCAGAACCTGTTGCCAAGG
AAAATGGGCAAAGGAAGGGAGGATATTGGATCTGCTTCGCAAGAATTTTA
GTGCTGAAACTTCTCTGCTTGTTGAATTTGAATACTTAAAAAAAAAAAAA
ATGCAGGATTGATTGATTTACGCAATTTTTTTCTTTATTTGTGATCCTTT
TATCTCCGTGTAAACTGGGATTTGGGTTCCGGCCGAATATAGTGAAACAA
TAATTTTTTGATGTCCCATCTCATTGTGTGGGGGTTTAAAGTTAGCAACA
ATGAAGTTGGTTTGCATTAAAAAAAAAAAAAA
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