CX043610

Overview
NameCX043610
Unique NameCX043610
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043610 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.183e-44
Identity = 93/189 (49.21%), Postives = 117/189 (61.90%), Query Frame = 1
Query:  223 GTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAND 786
            G A  G  +G +I++ +F  +L  R++ +CPAR FYTYDAFI AA +FPAFG SG    + +RE+AAFF QT HETTGG       ++ WGYCF  E+  A+S            YYGRGPIQL+   NY               NPDL++TD V+SFK+AIWFWMTAQ  KPSCH+VI+  W PSA D
Sbjct:   26 GAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGG-TRGSSDQFQWGYCFKEEINKATSP----------PYYGRGPIQLTGQSNYQAA--GNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAAD 199          
BLAST of CX043610 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.464e-44
Identity = 93/180 (51.67%), Postives = 115/180 (63.89%), Query Frame = 1
Query:  247 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAND 786
            +G I++  +F ++L+ RND RCPA  FYTYDAFI AA +FP FG SG++T R++EIAAFF QT HETTGG   A    +  GYCF R+     +D  D       +YYGRGPIQL+   NY +            NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA D
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ-----NDQSD-------RYYGRGPIQLTNQNNYEKA--GNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAAD 190          
BLAST of CX043610 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.464e-44
Identity = 88/201 (43.78%), Postives = 120/201 (59.70%), Query Frame = 1
Query:  223 GTAGDGG------ELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD------PNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDV 789
            G  G GG       +  I+S +++  L  +++D  CPAR FYTY +F+ AA  FP F  +G    RKRE+AAF AQ  HETTGGW  AP G YAWG C+  E+   SS YCD      P YP +  Y+GRGPIQ+SWN+NY               NP+++A    ++F++A+WFWMT +  KPSCH+V++ E++P   DV
Sbjct:   35 GGGGGGGYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSS-YCDATDKQWPCYPGK-SYHGRGPIQISWNFNY--GPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADV 231          
BLAST of CX043610 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.590e-43
Identity = 92/180 (51.11%), Postives = 115/180 (63.89%), Query Frame = 1
Query:  247 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAND 786
            +G I++  +F ++L+ RND RCPA  FYTYDAFI AA +FP FG +G++T R++EIAAFF QT HETTGG   A    +  GYCF R+     +D  D       +YYGRGPIQL+   NY +            NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA D
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ-----NDQSD-------RYYGRGPIQLTNRNNYEKA--GTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAAD 190          
BLAST of CX043610 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 2.375e-39
Identity = 86/233 (36.91%), Postives = 124/233 (53.22%), Query Frame = 1
Query:   85 CGSGV---VCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC-DPNYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIID 762
            CG+ V    C    CCS  GWCG   DYC    CQ  C+  V G      G +        +++  +F+ +  +R D  CP++ FY+Y +F+ AA++FPAFG  G+   RKRE+AAF A     T+G   D     +AWG C         +D+C   ++PC    KY  RGPIQL+ N+NY               NPDL+  DP++SFK+A+WFWM+    KPSCH+++++
Sbjct:   72 CGAAVGNPPCGQDRCCSVHGWCGGGNDYCSGSKCQYRCSSSVRGPRVALSGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVE-NPHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNY--GLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVLN 299          
BLAST of CX043610 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.052e-39
Identity = 84/180 (46.67%), Postives = 106/180 (58.89%), Query Frame = 1
Query:  247 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAND 786
            +  +IS  +FE +L +R         FYTYDAFI AAK+FPAF  +G+  +RKRE+AAF AQT HETTGGWP AP G Y        E+G+ S             Y+GRGPIQ+S+NYNY               NPDL+ +D  + FK+A+WFWMT Q PKPS H+VI   W PS+ D
Sbjct:    1 VSSVISSSLFEKMLLHRG--------FYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPY--------ELGSTSD------------YFGRGPIQISYNYNY--GAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTD 150          
BLAST of CX043610 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 3.550e-35
Identity = 87/224 (38.84%), Postives = 115/224 (51.34%), Query Frame = 1
Query:   82 NCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGD--GGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPP 732
            NCG    C    CCS+FG+CG T  YC  GC+S       G C    GT     GG +G I+++  F  ++       C  + FYT D+FI AA  FP F NS    + +REIA  FA   HET               +C+  E+  AS DYCD N   YPC  GK Y+GRGPIQLSWNYNY  C             P+L++++P ++F++ +WFWM +  P
Sbjct:   26 NCG----CAPNLCCSQFGYCGSTDAYCGTGCRS-------GPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGGG-CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHETGH-------------FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGAC--GQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP 218          
BLAST of CX043610 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.908e-35
Identity = 81/222 (36.49%), Postives = 114/222 (51.35%), Query Frame = 1
Query:   73 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP---NYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTA 723
            +A NCG    C    CCS+FG+CG T +YC +GCQS      C       G+ G G  +  +++   F  + + +    C  + FYT  AF+ A K +P F + G++   KREIAAFFA   HET               +C+  E+   S+ YCDP    +PC    KYYGRGP+Q+SWNYNY               +P  +A D V++FK+A+WFWM +
Sbjct:   19 AAQNCG----CQPNVCCSKFGYCGTTDEYCGDGCQSG----PCRSGRGGGGSGGGGANVASVVTSSFFNGI-KNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHET-------------GHFCYISEIN-KSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNS 215          
BLAST of CX043610 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.142e-33
Identity = 87/249 (34.94%), Postives = 122/249 (49.00%), Query Frame = 1
Query:   73 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSN-CNQVVCGECDPDDGTAGDGGELG---KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVN 792
            SA NCG    C    CCS++G+CG   DYC +GC+S  C     G      G  G GG  G   + +  + F + ++ +    C  + FYT  +F+ AA ++  F         KREIAAFFA   HET                C+  E+  AS DYCD N   +PC+   KYYGRGP+Q+SWNYNY               +PD +A DP +SFK+A+WFWM       + H+V++  +  +   +N
Sbjct:   28 SAQNCG----CQSNMCCSKWGYCGTGKDYCGDGCRSGPCYGGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNY--GPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMN------NVHQVMLQGFGATIRAIN 251          
BLAST of CX043610 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.544e-33
Identity = 81/219 (36.99%), Postives = 117/219 (53.42%), Query Frame = 1
Query:   73 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD---PNYPC-RGK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFW 714
            +A +CG    C   +CCS++G+CG  +DYC  GCQ+           P D  A +   +  I++ + F  L+   +D  C A+ FYT DAF+ AA  +P+FG +G+    KREIAAFFA   HET               +C+  E+   S +YCD     +PC  GK YYGRGP+Q+SWN+NY               +PD +A  PVL+F++A+W+W
Sbjct:   24 AAQSCG----CASDQCCSKWGFCGTGSDYCGTGCQAG----------PCDVPATNDVSVASIVTPEFFAALVAQADDG-CAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNY--GPAGQSIGFDGLGDPDAVARSPVLAFQTALWYW 212          
The following BLAST results are available for this feature:
BLAST of CX043610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI8_ORYSJ4.183e-4449.21Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_TOBAC5.464e-4451.67Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI10_ORYSJ5.464e-4443.78Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIQ_TOBAC1.590e-4351.11Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
AGI_URTDI2.375e-3936.91Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIT_AVESA4.052e-3946.67Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI4_BRANA3.550e-3538.84Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIB_MAIZE7.908e-3536.49Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI5_ORYSJ1.142e-3334.94Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI6_ORYSJ2.544e-3336.99Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12C06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12C06-E12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043610 ID=CX043610; Name=CX043610; organism=Citrus sinensis; type=EST; length=792bp
GTTGCTTTCAAAATGAGGCTTATTGGGTCCTTACTAATTTTCTCTCTGGT
TTTATCTTTTGTACTAGGAGGCTCAGCAGGGAACTGTGGAAGCGGCGTTG
TGTGCCCAGGAGGGGAGTGTTGTAGTCGATTTGGTTGGTGTGGCCTAACA
ACAGACTACTGTTGTGAAGGCTGCCAAAGTAACTGTAATCAGGTTGTTTG
CGGTGAATGTGATCCCGACGACGGGACGGCTGGTGATGGCGGTGAACTGG
GCAAGATCATCTCAAGGAAGATGTTTGAAGACTTGCTTGAGTATAGAAAT
GATAAACGATGCCCTGCCAGATGCTTCTACACTTATGATGCTTTTATAGA
GGCAGCCAAAGCTTTTCCAGCCTTTGGTAATTCTGGAAATGAAACCATGC
GTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACT
GGGGGATGGCCCGATGCACCTGGTGGCGAATATGCTTGGGGATATTGCTT
TAATAGGGAAGTTGGCGCTGCGTCGTCCGACTACTGTGATCCTAACTATC
CATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCTCTTGGAAT
TACAATTACTTACGGTGCGGAGAAGGCCTAGGGCTAGGAGAGGAGTTGTT
GAACAATCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTCAG
CAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAA
GTCATTATCGACGAATGGAAACCATCAGCAAATGACGTAAAC
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