CX043610

Overview
NameCX043610
Unique NameCX043610
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043610 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.544e-33
Identity = 82/225 (36.44%), Postives = 115/225 (51.11%), Query Frame = 1
Query:   73 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSN-C----NQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 717
            +A NCG    C  G CCS++G+CG T  YC +GCQS  C     +   G      G AG G  +  +++   F  + + +    C  + FYT  +F+ AA+++  F N       KREIAAFFA   HET                C+  E+  A+ DYCD +   +PC+   KYYGRGP+Q+SWN+NY               +PD +A DP +SFK+A+WFWM
Sbjct:   26 AAQNCG----CQDGYCCSQWGYCGTTEAYCGQGCQSGPCWGSGGEAAAGMAGRKAG-AGAGVSVESVVTEAFFNGI-KNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY--GPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM 229          
BLAST of CX043610 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.262e-32
Identity = 83/221 (37.56%), Postives = 111/221 (50.23%), Query Frame = 1
Query:   73 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSN-CNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 717
            +A NCG    C    CCS+FG+CG T  YC +GCQS  C     G      G  G GG     +    F + ++ +    C  + FYT  AF+ A  A+P F + G E   KREIAAFFA   HET               +C+  E+   S+ YCD +   +PC    KYYGRGP+Q+SWNYNY               +P+ +A D V++FK+A+WFWM
Sbjct:   24 AAQNCG----CQPNFCCSKFGYCGTTDAYCGDGCQSGPCRSGGGGGGGGGGGGGGSGGANVANVVTDAFFNGIKNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEIN-KSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM 224          
BLAST of CX043610 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.813e-32
Identity = 91/232 (39.22%), Postives = 108/232 (46.55%), Query Frame = 1
Query:   76 AGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDD----------GTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREV-GAASSDYCDPN----YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMT 720
            A NCG    C    CCS FG+CG  T YC  G   NC    C    P            GT G G  +  I+S+  F+ ++  +    CP + FYT  AF+ A    P FGN G+    KREIAAFFA   HETT               C   E  G     YCD +    YPC    KYYGRGP+QLSWNYNY               NP+ +ATD   SFK+A+WFWMT
Sbjct:   27 AQNCG----CAPNLCCSNFGFCGTGTPYCGVG---NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNY--ALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT 233          
BLAST of CX043610 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.396e-31
Identity = 77/205 (37.56%), Postives = 108/205 (52.68%), Query Frame = 1
Query:  118 CCSRFGWCGLTTDYCCEGCQSNCNQVVCGEC-DPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC--RGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 717
            CCS+ G+CG + DYC  GCQ+       G C DP +G   DG      I  + F D +  +    CP + FYT   F+EA  A+P FG    +  RKREIAA+FA   HET                C+  E    +++YC  +  YPC    +Y+GRGP+QLSWNYNY+             N+PD++  DP++SFK+++WFW+
Sbjct:   11 CCSQHGYCGNSYDYCGPGCQA-------GPCWDPCEG---DGTLTVSDIVTQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHET-------------GHLCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYI--DAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI 190          
BLAST of CX043610 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.927e-31
Identity = 81/221 (36.65%), Postives = 108/221 (48.87%), Query Frame = 1
Query:   73 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD----PNYPCRGK--YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 717
            SA NCG    C  G CCS++G+CG   DYC  GCQ    Q  C    P      +      I++      +++ + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +C+  E+  AS DYCD      YPC     Y+GRGPIQLSWN+NY                P+ ++ D V+SFK+A+W+WM
Sbjct:   22 SAQNCG----CAEGLCCSQYGYCGTGEDYCGTGCQ----QGPCTTASPPPSNNVNAD----ILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM 214          
BLAST of CX043610 vs. ExPASy Swiss-Prot
Match: CHIC_POPTR (Acidic endochitinase WIN6.2C (Fragment) OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.827e-23
Identity = 57/105 (54.29%), Postives = 66/105 (62.86%), Query Frame = 1
Query:   70 GSAGNCG---SGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGE-CDPDDGTAGDG--GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAF 366
            GSA  CG      +CPGG CCS +GWCG T DYC +GCQS C+    G+ CD   G  GDG  G L  II +  F+ LL++RND RC A  FYTYDAFI AAK F
Sbjct:   20 GSAEQCGRQAGDALCPGGLCCSFYGWCGTTVDYCGDGCQSQCDG---GDGCDGGGGGGGDGDDGYLSDIIPKSTFDALLKFRNDPRCHAVGFYTYDAFISAAKEF 121          
The following BLAST results are available for this feature:
BLAST of CX043610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI4_ORYSJ2.544e-3336.44Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE1.262e-3237.56Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIP_BETVU2.813e-3239.22Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIT_DIOJA1.396e-3137.56Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_PHAVU6.927e-3136.65Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIC_POPTR1.827e-2354.29Acidic endochitinase WIN6.2C (Fragment) OS=Populus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12C06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12C06-E12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043610 ID=CX043610; Name=CX043610; organism=Citrus sinensis; type=EST; length=792bp
GTTGCTTTCAAAATGAGGCTTATTGGGTCCTTACTAATTTTCTCTCTGGT
TTTATCTTTTGTACTAGGAGGCTCAGCAGGGAACTGTGGAAGCGGCGTTG
TGTGCCCAGGAGGGGAGTGTTGTAGTCGATTTGGTTGGTGTGGCCTAACA
ACAGACTACTGTTGTGAAGGCTGCCAAAGTAACTGTAATCAGGTTGTTTG
CGGTGAATGTGATCCCGACGACGGGACGGCTGGTGATGGCGGTGAACTGG
GCAAGATCATCTCAAGGAAGATGTTTGAAGACTTGCTTGAGTATAGAAAT
GATAAACGATGCCCTGCCAGATGCTTCTACACTTATGATGCTTTTATAGA
GGCAGCCAAAGCTTTTCCAGCCTTTGGTAATTCTGGAAATGAAACCATGC
GTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACT
GGGGGATGGCCCGATGCACCTGGTGGCGAATATGCTTGGGGATATTGCTT
TAATAGGGAAGTTGGCGCTGCGTCGTCCGACTACTGTGATCCTAACTATC
CATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCTCTTGGAAT
TACAATTACTTACGGTGCGGAGAAGGCCTAGGGCTAGGAGAGGAGTTGTT
GAACAATCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTCAG
CAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAA
GTCATTATCGACGAATGGAAACCATCAGCAAATGACGTAAAC
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