CX043605

Overview
NameCX043605
Unique NameCX043605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_MARAV (Glutamyl-tRNA reductase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=hemA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 46/139 (33.09%), Postives = 72/139 (51.80%), Query Frame = -2
Query:  415 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKV 831
            +Y VDDL++V+  N   R   A EA+ +IS   + F     +L+ V T+K  R  AE +R  E +K L  + +    +T  A+  L+RG+ NKLLH P   +R   ++ RT  E  E +  L ++  LE D     +K+
Sbjct:  295 LYTVDDLRQVIEENIRSREGAAREAENLISSGVQDFLDQLRALDAVSTLKVFRQRAELLRDVETEKALRALRNGTDPET--ALRSLARGLTNKLLHQPSVQVRKAMAEGRT--EVTECLRELYQLDALEADEPTTTEKL 429          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_NITMU (Glutamyl-tRNA reductase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=hemA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 42/112 (37.50%), Postives = 58/112 (51.79%), Query Frame = -2
Query:  502 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELD--KCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSR 831
            +Y+VDDL ++V    + R     +A+AII      F  W +S + VPTI+ LR  AER R  EL+  K L   G+D     R+ ++ LS G+ NK LH P   L     D R
Sbjct:  296 LYSVDDLADIVKEGLDSRQGAVAQAEAIIDSNVVNFMHWLESRQVVPTIRALRDQAERYRRHELERAKKLLAKGED----PRKIIESLSNGLTNKFLHLPSYALNHAAEDER 403          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_DESMR (Glutamyl-tRNA reductase OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=hemA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 35/103 (33.98%), Postives = 59/103 (57.28%), Query Frame = -2
Query:  523 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLR 831
            +Y++DDL+EVV  N   R  +A  A+ II  + ++F  W  SL+  PTI  L      +   EL K L ++G ++ ++TR A++ ++  I  K+LH P+  L+
Sbjct:  298 LYDIDDLQEVVEENLAQRREEAARARDIIGLQVERFGEWVKSLDVKPTIVDLLDVGASLARQELQKTLRRLGPEVPEETRAALETMALSISRKMLHEPIAFLK 400          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_ALISL (Glutamyl-tRNA reductase OS=Aliivibrio salmonicida (strain LFI1238) GN=hemA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 35/98 (35.71%), Postives = 58/98 (59.18%), Query Frame = -2
Query:  538 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGP 831
            +Y+VDDLK ++  N E R  +A++A+AI+SEES  F  W  S + V +I++ R  +E IR+  L K +  +     +   + + +LS  + NKL+H P
Sbjct:  296 LYSVDDLKSIIDHNIEQRKIEAIQAEAIVSEESAGFMTWIRSRQAVNSIRQYRENSESIRIELLQKSIQALAS--GQNAEKVLAELSNKLTNKLIHAP 391          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_ROSS1 (Glutamyl-tRNA reductase OS=Roseiflexus sp. (strain RS-1) GN=hemA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 50/141 (35.46%), Postives = 77/141 (54.61%), Query Frame = -2
Query:  427 KLHGVY--NVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLF 843
            ++ GVY  +VD L+ +   N+  R  +A  A+ II  E  +F  W    + VPTI+ LR  AE IR AE+ + L++   ++S + R  V  LS  I+NKLLH P+  LR    D     E L    A+ R+F ++ DT+++
Sbjct:  288 EIPGVYLHDVDALEPICRTNRALRAAEAERAETIIEGEVAKFMEWWAVQQAVPTIRALRKRAEDIRDAEIRRALARC-PELSPQQRETVIALSTAIINKLLHEPIVALR----DPEASGELLT---AVRRLFNID-DTAVY 419          
The following BLAST results are available for this feature:
BLAST of CX043605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
HEM1_MARAV5.210e-1133.09Glutamyl-tRNA reductase OS=Marinobacter aquaeolei ... [more]
HEM1_NITMU6.805e-1137.50Glutamyl-tRNA reductase OS=Nitrosospira multiformi... [more]
HEM1_DESMR6.805e-1133.98Glutamyl-tRNA reductase OS=Desulfovibrio magneticu... [more]
HEM1_ALISL6.805e-1135.71Glutamyl-tRNA reductase OS=Aliivibrio salmonicida ... [more]
HEM1_ROSS18.887e-1135.46Glutamyl-tRNA reductase OS=Roseiflexus sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12C02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12C02-E4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043605 ID=CX043605; Name=CX043605; organism=Citrus sinensis; type=EST; length=850bp
TTTTTTTTTTTTTTTTTCGTGATACTGCAAAAGTTCTTTCATGGAGACCG
AAAGGGAAGAAATCCCCAACAAAGACATTTACACAAGCGTGTCTCTATAT
AATGAAGTACATTAATTACATGGATTTATAGTGGTTTCATCGGTACAAGG
ATCAGGCTCACCTCTATCCTAGGAGGTTGGAAGGCACCCAAATGAGAGTT
AGGAAAAAAGTGTCTTATAACAACACTTGACGAATTGAATGATCCCACAT
AGGGATCTACACTGTTATACTATTCAAATGAAGAATACAGCAATGCCGAG
ACTCACAACAAGGTGAGGACGTTTTCCTCTTATTCAATTGAGGAAGTGAA
TGAAGTGCCATTGACAAACTGGTATTCAAAAAGCTCACTTCTGGTTTTGT
TCTATCTTGGCTCGAACCTTTTGCTCGAAAAGAGATGTATCTGTTTCAAG
GCCAAACATTCTGTTTAGAGCATGCATGTTCTCAAGGGTCTCGTCTAGAG
TCCTGCTGTCACTCCCATCACATCTCAAGTGCTGCATTGGACCATGAAGA
AGCTTATTCACGATACCACGGCTAAGGTCATCGACAGCCCTCCTTGTTTT
CTTTGAGATATCATCACCCATCTTTGATAGGCATTTATCTAACTCTGCCA
CCCTGATTCTCTCAGCATAAGCTCTCAATTTCTTAATAGTAGGAACAGTC
TCCAATGAATCCCTCCAAGCTGCAAACTGTTTTGATTCCTCAGAAATAAT
AGCCTGAGCTTCCATTGCTTTTCGGAGCCTGTCCTCTTTATTAGCAGCCA
CTACCTCCTTAAGGTCATCAACATTGTAAACCCCGTGCAGTTTCAACATC
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