CX043605

Overview
NameCX043605
Unique NameCX043605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_PROMA (Glutamyl-tRNA reductase OS=Prochlorococcus marinus GN=hemA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.543e-23
Identity = 60/130 (46.15%), Postives = 86/130 (66.15%), Query Frame = -2
Query:  439 YNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETD 828
            Y+VDDL+EVVA N++ R + A+EAQ +I EE++ F  W  SLE VPTI +LR+  E IR  EL K LS+MG D S + R+ V+ LS+GI+NK+LH P+ +LR     S+   E+L+ + +L  +   E D
Sbjct:  308 YDVDDLQEVVARNQDARQQIAIEAQNLIDEEARVFLEWWASLEAVPTINRLRSNLESIRKEELQKALSRMGPDFSARERKVVEALSKGIINKILHTPVTNLRAPQPSSQR-KESLKIVESLFELGVSEND 436          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_PROM3 (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain MIT 9303) GN=hemA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.543e-23
Identity = 53/102 (51.96%), Postives = 72/102 (70.59%), Query Frame = -2
Query:  523 YNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLR 828
            ++VDDL EVV+ N+E R + A EA+ ++ EE++ F  W DSLE VPTI +LRA  E IR  EL K LS+MG D S + R+ V+ LS+GI+NK+LH P+  LR
Sbjct:  307 HDVDDLHEVVSRNQEARQQMAKEAEVVLQEETRLFLEWWDSLEAVPTINRLRATLEAIRAEELQKALSRMGPDFSARERKVVEALSKGIINKILHTPVTQLR 408          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_SYNS3 (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain CC9311) GN=hemA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.934e-23
Identity = 57/129 (44.19%), Postives = 83/129 (64.34%), Query Frame = -2
Query:  442 YNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLET 828
            ++VDDL+EVV  N+E R + A EA+ ++ EE + F  W DSLE VPTI +LRA  E IRV EL K LS+MG D S + R+ V+ L++G++NK+LH P+  LR     S    E  + +  + ++F LE+
Sbjct:  307 HDVDDLQEVVERNQEARQQVAREAEGLLLEEGRLFLEWWDSLEAVPTINRLRASLEEIRVEELTKALSRMGPDFSARERKVVEALTKGMINKILHTPVTQLRSPQQRS----ERQQALQVVEKIFDLES 431          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_CYAP7 (Glutamyl-tRNA reductase OS=Cyanothece sp. (strain PCC 7424) GN=hemA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.749e-23
Identity = 57/130 (43.85%), Postives = 82/130 (63.08%), Query Frame = -2
Query:  439 YNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETD 828
            YNVDDLK VVAAN+E R R A EA+ ++ EE + F  W  SL+TVPTI  LR   E IR  EL+K LS++G + ++K +  ++ L+RGIVNK+LH PM  LR      + ++     + +L  +F L+ +
Sbjct:  299 YNVDDLKAVVAANQESRRRLAQEAEGLLEEEVESFELWWRSLDTVPTISCLRDKVETIREQELEKALSRLGTEFAEKHQEVIEALTRGIVNKILHEPMVQLRA----QQDIEARKRCLQSLQMLFDLDIE 424          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_SYNY3 (Glutamyl-tRNA reductase OS=Synechocystis sp. (strain PCC 6803) GN=hemA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.012e-22
Identity = 56/130 (43.08%), Postives = 83/130 (63.85%), Query Frame = -2
Query:  439 YNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETD 828
            +NVDDLKEVVA N+  R + A +A+A++ EE   F  W  SLETVPTI  LR+  E IR  EL+K LS++G + ++K +  ++ L+RGIVNK+LH PM  LR      + ++   + + +L  +F LE +
Sbjct:  298 FNVDDLKEVVAQNQASRRQMARQAEALLEEEIAAFDLWWRSLETVPTISSLRSKVEDIREQELEKALSRLGSEFAEKHQEVIEALTRGIVNKILHEPMVQLRA----QQDIEARKQCLRSLKMLFDLEVE 423          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_PROM4 (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain MIT 9211) GN=hemA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.012e-22
Identity = 59/135 (43.70%), Postives = 83/135 (61.48%), Query Frame = -2
Query:  424 YNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFE 828
            ++VDDL+EVV+ N+E R + A+EA+A++ EE + F  W  SLE VPTI  LR+  E +R  EL K LS+MG D S + R+ V+ LS+GI+NK+LH P+ +LR   + S             NR   LE   +LFE
Sbjct:  307 HDVDDLQEVVSRNQEARQQIALEAEALVDEEGRIFLEWWASLEAVPTINLLRSSLESVRKEELQKALSRMGPDFSARERKVVEALSKGIINKILHTPVTNLRAPQTSS-------------NRKISLEVIETLFE 428          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_CYAP8 (Glutamyl-tRNA reductase OS=Cyanothece sp. (strain PCC 8801) GN=hemA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.945e-22
Identity = 57/130 (43.85%), Postives = 80/130 (61.54%), Query Frame = -2
Query:  439 YNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETD 828
            YNVDDLK VVA N E R + A EA+ ++ EE + F  W  SLETVPTI  LR   E IR  EL+K LS++G + ++K +  ++ L+RGIVNK+LH PM  LR      + ++     + +L  +F LE +
Sbjct:  299 YNVDDLKAVVAQNYESRRQMAQEAEGLLEEEVEAFDLWWRSLETVPTISCLRTKVETIREQELEKALSRLGTEFAEKHQEVIEALTRGIVNKILHEPMVQLRA----QQDIEARKRCLESLKMLFDLEIE 424          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_CYAA5 (Glutamyl-tRNA reductase OS=Cyanothece sp. (strain ATCC 51142) GN=hemA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.945e-22
Identity = 57/136 (41.91%), Postives = 83/136 (61.03%), Query Frame = -2
Query:  439 LKLHGVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETD 846
            L++   YNVDDLK VVA N   R + A+EA+ ++ EE + F  W  SLETVPTI  LR   E IR  EL+K LS++G + ++K +  ++ L+RGIVNK+LH PM  LR      + ++     + +L  +F LE +
Sbjct:  293 LEIVEAYNVDDLKAVVAQNHASRRQMALEAEGLLEEEVEAFELWWRSLETVPTISCLRTKVESIREQELEKALSRLGTEFAEKHQEVIEALTRGIVNKILHEPMVQLRA----QQDIEARQRCLQSLQMLFDLEIE 424          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_SYNP6 (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=hemA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.846e-22
Identity = 59/133 (44.36%), Postives = 80/133 (60.15%), Query Frame = -2
Query:  430 YNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSL 828
            YNVDDL+EVVA N+E R + A EA+A++ EE   F  W  SL+TVPTI  LR   E IR  EL+K LS++G +   K +  V+ L+RGIVNK+LH PM  LR      + ++     + AL  +F L+    L
Sbjct:  308 YNVDDLREVVAQNQESRRKLAEEAEALLEEEVDAFDNWWQSLDTVPTINCLRDKIEMIREQELEKALSRLGTEFGDKHQAVVEALTRGIVNKILHDPMVQLR----SQQDIEARRRAVDALQMLFNLDPQGQL 436          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_SYNE7 (Glutamyl-tRNA reductase OS=Synechococcus elongatus (strain PCC 7942) GN=hemA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.846e-22
Identity = 59/133 (44.36%), Postives = 80/133 (60.15%), Query Frame = -2
Query:  430 YNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSL 828
            YNVDDL+EVVA N+E R + A EA+A++ EE   F  W  SL+TVPTI  LR   E IR  EL+K LS++G +   K +  V+ L+RGIVNK+LH PM  LR      + ++     + AL  +F L+    L
Sbjct:  308 YNVDDLREVVAQNQESRRKLAEEAEALLEEEVDAFDNWWQSLDTVPTINCLRDKIEMIREQELEKALSRLGTEFGDKHQAVVEALTRGIVNKILHDPMVQLR----SQQDIEARRRAVDALQMLFNLDPQGQL 436          
The following BLAST results are available for this feature:
BLAST of CX043605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
HEM1_PROMA4.543e-2346.15Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_PROM34.543e-2351.96Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_SYNS35.934e-2344.19Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]
HEM1_CYAP77.749e-2343.85Glutamyl-tRNA reductase OS=Cyanothece sp. (strain ... [more]
HEM1_SYNY31.012e-2243.08Glutamyl-tRNA reductase OS=Synechocystis sp. (stra... [more]
HEM1_PROM41.012e-2243.70Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_CYAP82.945e-2243.85Glutamyl-tRNA reductase OS=Cyanothece sp. (strain ... [more]
HEM1_CYAA52.945e-2241.91Glutamyl-tRNA reductase OS=Cyanothece sp. (strain ... [more]
HEM1_SYNP63.846e-2244.36Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]
HEM1_SYNE73.846e-2244.36Glutamyl-tRNA reductase OS=Synechococcus elongatus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12C02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12C02-E4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043605 ID=CX043605; Name=CX043605; organism=Citrus sinensis; type=EST; length=850bp
TTTTTTTTTTTTTTTTTCGTGATACTGCAAAAGTTCTTTCATGGAGACCG
AAAGGGAAGAAATCCCCAACAAAGACATTTACACAAGCGTGTCTCTATAT
AATGAAGTACATTAATTACATGGATTTATAGTGGTTTCATCGGTACAAGG
ATCAGGCTCACCTCTATCCTAGGAGGTTGGAAGGCACCCAAATGAGAGTT
AGGAAAAAAGTGTCTTATAACAACACTTGACGAATTGAATGATCCCACAT
AGGGATCTACACTGTTATACTATTCAAATGAAGAATACAGCAATGCCGAG
ACTCACAACAAGGTGAGGACGTTTTCCTCTTATTCAATTGAGGAAGTGAA
TGAAGTGCCATTGACAAACTGGTATTCAAAAAGCTCACTTCTGGTTTTGT
TCTATCTTGGCTCGAACCTTTTGCTCGAAAAGAGATGTATCTGTTTCAAG
GCCAAACATTCTGTTTAGAGCATGCATGTTCTCAAGGGTCTCGTCTAGAG
TCCTGCTGTCACTCCCATCACATCTCAAGTGCTGCATTGGACCATGAAGA
AGCTTATTCACGATACCACGGCTAAGGTCATCGACAGCCCTCCTTGTTTT
CTTTGAGATATCATCACCCATCTTTGATAGGCATTTATCTAACTCTGCCA
CCCTGATTCTCTCAGCATAAGCTCTCAATTTCTTAATAGTAGGAACAGTC
TCCAATGAATCCCTCCAAGCTGCAAACTGTTTTGATTCCTCAGAAATAAT
AGCCTGAGCTTCCATTGCTTTTCGGAGCCTGTCCTCTTTATTAGCAGCCA
CTACCTCCTTAAGGTCATCAACATTGTAAACCCCGTGCAGTTTCAACATC
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