CX043605

Overview
NameCX043605
Unique NameCX043605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_SYNJB (Glutamyl-tRNA reductase OS=Synechococcus sp. GN=hemA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.568e-22
Identity = 58/135 (42.96%), Postives = 79/135 (58.52%), Query Frame = -2
Query:  445 KLHGV--YNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLE 843
            KL GV  +NVD L  +V  N+  R + A+ A+A++ EE  QF  W  SLETVPTI  LR   E IR  E++K LS++G D ++K    +D L+RGIVNK+LH PM  LR      R ++     M  L  +F L+
Sbjct:  291 KLKGVQVFNVDHLSRIVEENRAQRQKLALAAEALVEEEVDQFMEWWRSLETVPTISSLRHKVESIREQEMEKALSRLGKDFAEKHLEVIDALTRGIVNKILHDPMVQLRA----KRDIEARRAAMRILQELFNLD 421          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_SYNJA (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain JA-3-3Ab) GN=hemA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.568e-22
Identity = 57/135 (42.22%), Postives = 80/135 (59.26%), Query Frame = -2
Query:  445 KLHGV--YNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLE 843
            KL GV  +NVD L  +V  N+  R + A+ A+A++ EE +QF  W  SLETVPTI  LR   E IR  E++K LS++G D ++K    ++ L+RGIVNK+LH PM  LR      R ++     M  L  +F L+
Sbjct:  291 KLRGVQVFNVDHLSRIVEENRAQRQKLALAAEALVEEEVEQFMEWWRSLETVPTISSLRHKVESIREQEMEKALSRLGKDFAEKHLEVIEALTRGIVNKILHDPMVQLRA----QRDIEARRRAMQILQELFNLD 421          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_MICAN (Glutamyl-tRNA reductase OS=Microcystis aeruginosa (strain NIES-843) GN=hemA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.461e-21
Identity = 51/102 (50.00%), Postives = 73/102 (71.57%), Query Frame = -2
Query:  523 YNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLR 828
            +NVDDLK VVAAN+E R + A EA+A++ +E + F  W  SL+TVPTI  LR+  E IR  EL+K LS++G + ++K +  ++ ++RGIVNK+LH PM  LR
Sbjct:  299 FNVDDLKAVVAANQESRRQMAREAEALLEQEVEAFELWWRSLDTVPTISCLRSKIEDIREQELEKALSRLGTEFAEKHQEVIEAMTRGIVNKILHEPMVQLR 400          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_SYNR3 (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain RCC307) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.252e-21
Identity = 53/130 (40.77%), Postives = 80/130 (61.54%), Query Frame = -2
Query:  439 YNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETD 828
            Y+VDDL+EVV  N   R + A +A+ ++ E+ + F  W D LE VPTI ++R   E IR  EL K LS+MG D S++ ++ V+ L++G++NK+LHGP   LR      +   + L++M A  R+F L  D
Sbjct:  307 YDVDDLQEVVERNVAARQQLAQQAEVLLDEDRQAFLDWWDGLEAVPTINRMRQQFEEIRKQELLKALSRMGSDFSQREKQVVEALTKGLINKILHGPTTALRA----PQPRQQRLDSMAAAQRLFDLPGD 432          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_ANAVT (Glutamyl-tRNA reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=hemA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.253e-21
Identity = 55/128 (42.97%), Postives = 76/128 (59.38%), Query Frame = -2
Query:  445 YNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLE 828
            +NVDDLK VVA N E R + A EA+ ++ EE + F  W  SLETV TI  LR+  E IR  EL+K LS++G +   K +  ++ L+RGIVNK+LH PM  LR      + ++     M  L  +F L+
Sbjct:  299 FNVDDLKAVVAQNYESRRKMAQEAERLLEEEIEAFDIWWRSLETVSTISSLRSKIETIREQELEKALSRLGSEFGDKHQEVIEALTRGIVNKILHDPMVQLRA----QQDVEARRRCMQTLQMLFNLD 422          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_ANASP (Glutamyl-tRNA reductase OS=Anabaena sp. (strain PCC 7120) GN=hemA PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 7.253e-21
Identity = 55/128 (42.97%), Postives = 76/128 (59.38%), Query Frame = -2
Query:  445 YNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLE 828
            +NVDDLK VVA N E R + A EA+ ++ EE + F  W  SLETV TI  LR+  E IR  EL+K LS++G +   K +  ++ L+RGIVNK+LH PM  LR      + ++     M  L  +F L+
Sbjct:  299 FNVDDLKAVVAQNYESRRKMAQEAERLLEEEIEAFDIWWRSLETVSTISSLRSKIETIREQELEKALSRLGSEFGDKHQEVIEALTRGIVNKILHDPMVQLRA----QQDVEARRRCMQTLQMLFNLD 422          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_PROMP (Glutamyl-tRNA reductase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.473e-21
Identity = 54/130 (41.54%), Postives = 82/130 (63.08%), Query Frame = -2
Query:  439 YNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETD 828
            ++VDDL+EVV+ N+E R + A EA++++ +E   F  W  SLE VP I KLR+  E IR  EL K LS+MG D S + R+ V+ L++GI+NK+LH P+  LR      ++ DE   ++  + ++F L  D
Sbjct:  307 FDVDDLEEVVSRNQEFRQKIAKEAESLVKDERIIFLEWWASLEAVPVINKLRSDLELIRKEELQKALSRMGPDFSARERKVVEALTKGIINKILHTPVTKLR----SPQSRDERQASLKIVEKLFSLVDD 432          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_PROM5 (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain MIT 9515) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.237e-20
Identity = 54/130 (41.54%), Postives = 82/130 (63.08%), Query Frame = -2
Query:  439 YNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETD 828
            ++VDDL+EVV+ N+E R + A EA++++ EE   F  W  SLE VP I KLR+  E IR  EL K LS+MG D S + R+ V+ L++GI+NK+LH P+  LR      ++ +E   ++  + ++F L  D
Sbjct:  307 FDVDDLEEVVSRNQEFRQKIAKEAESLVKEERIIFLEWWASLEAVPVINKLRSDLELIRKEELQKALSRMGPDFSARERKVVEALTKGIINKILHTPVTKLR----SPQSREERQASLKIVEKLFSLMDD 432          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_NOSP7 (Glutamyl-tRNA reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=hemA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.237e-20
Identity = 55/130 (42.31%), Postives = 78/130 (60.00%), Query Frame = -2
Query:  439 YNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETD 828
            +NVDDLK VVA N E R + A EA+ ++ EE + F  W  SLETV TI  LR   E IR  EL+K LS++G + ++K +  ++ L+RGIVNK+LH PM  LR      + ++     M  L  +F L+ +
Sbjct:  299 FNVDDLKAVVAQNYESRRKIAQEAEKLLEEEVEAFDIWWRSLETVTTISCLRNKVETIREQELEKALSRLGSEFAEKHQEVIEALTRGIVNKILHDPMVQLR----SQQDVEARRRCMQTLQMLFNLDAE 424          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_CYAPA (Glutamyl-tRNA reductase OS=Cyanophora paradoxa GN=hemA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.237e-20
Identity = 54/130 (41.54%), Postives = 79/130 (60.77%), Query Frame = -2
Query:  442 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLET 831
            V+NVDDLK VV+ N++ R + A  A+ ++ EE   F  W  SLE +PTI KLR  AE IRV EL+K +S++G++     +  V+ L+RGIVNK+LH PM  LR      + ++     +  L  +F L+T
Sbjct:  298 VFNVDDLKVVVSQNQQTRRKMAKAAEILLEEELSAFNIWWGSLEAIPTINKLREKAEIIRVKELEKAISRLGNEFVSDHQEIVESLTRGIVNKILHDPMVQLRA----QQDIEIRGRALKILQTLFNLDT 423          
The following BLAST results are available for this feature:
BLAST of CX043605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
HEM1_SYNJB8.568e-2242.96Glutamyl-tRNA reductase OS=Synechococcus sp. GN=he... [more]
HEM1_SYNJA8.568e-2242.22Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]
HEM1_MICAN1.461e-2150.00Glutamyl-tRNA reductase OS=Microcystis aeruginosa ... [more]
HEM1_SYNR34.252e-2140.77Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]
HEM1_ANAVT7.253e-2142.97Glutamyl-tRNA reductase OS=Anabaena variabilis (st... [more]
HEM1_ANASP7.253e-2142.97Glutamyl-tRNA reductase OS=Anabaena sp. (strain PC... [more]
HEM1_PROMP9.473e-2141.54Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_PROM51.237e-2041.54Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_NOSP71.237e-2042.31Glutamyl-tRNA reductase OS=Nostoc punctiforme (str... [more]
HEM1_CYAPA1.237e-2041.54Glutamyl-tRNA reductase OS=Cyanophora paradoxa GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12C02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12C02-E4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043605 ID=CX043605; Name=CX043605; organism=Citrus sinensis; type=EST; length=850bp
TTTTTTTTTTTTTTTTTCGTGATACTGCAAAAGTTCTTTCATGGAGACCG
AAAGGGAAGAAATCCCCAACAAAGACATTTACACAAGCGTGTCTCTATAT
AATGAAGTACATTAATTACATGGATTTATAGTGGTTTCATCGGTACAAGG
ATCAGGCTCACCTCTATCCTAGGAGGTTGGAAGGCACCCAAATGAGAGTT
AGGAAAAAAGTGTCTTATAACAACACTTGACGAATTGAATGATCCCACAT
AGGGATCTACACTGTTATACTATTCAAATGAAGAATACAGCAATGCCGAG
ACTCACAACAAGGTGAGGACGTTTTCCTCTTATTCAATTGAGGAAGTGAA
TGAAGTGCCATTGACAAACTGGTATTCAAAAAGCTCACTTCTGGTTTTGT
TCTATCTTGGCTCGAACCTTTTGCTCGAAAAGAGATGTATCTGTTTCAAG
GCCAAACATTCTGTTTAGAGCATGCATGTTCTCAAGGGTCTCGTCTAGAG
TCCTGCTGTCACTCCCATCACATCTCAAGTGCTGCATTGGACCATGAAGA
AGCTTATTCACGATACCACGGCTAAGGTCATCGACAGCCCTCCTTGTTTT
CTTTGAGATATCATCACCCATCTTTGATAGGCATTTATCTAACTCTGCCA
CCCTGATTCTCTCAGCATAAGCTCTCAATTTCTTAATAGTAGGAACAGTC
TCCAATGAATCCCTCCAAGCTGCAAACTGTTTTGATTCCTCAGAAATAAT
AGCCTGAGCTTCCATTGCTTTTCGGAGCCTGTCCTCTTTATTAGCAGCCA
CTACCTCCTTAAGGTCATCAACATTGTAAACCCCGTGCAGTTTCAACATC
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