CX043605

Overview
NameCX043605
Unique NameCX043605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_GEOMG (Glutamyl-tRNA reductase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=hemA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.565e-15
Identity = 55/137 (40.15%), Postives = 79/137 (57.66%), Query Frame = -2
Query:  421 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQ 831
            +Y++DDL+ VVA+N + R  +A +A+AII EE  QF  W  +LE  PTI  LR+  E  R AEL+K L+    D+     + ++ L+  IVNKLLH P   L+  G   RT D  ++   AL  +F L+T  S  E+
Sbjct:  297 LYDMDDLQGVVASNLQQRAEEAKKAEAIIDEEIGQFHKWLSNLEVTPTIVALRSKFEETRKAELEKTLASW-KDLPPDGAKRLEALTTAIVNKLLHPPTATLKRVGQGGRT-DLYVD---ALRTLFELQTGESEAEE 428          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_SULSY (Glutamyl-tRNA reductase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=hemA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.670e-15
Identity = 42/109 (38.53%), Postives = 70/109 (64.22%), Query Frame = -2
Query:  523 KLHGVY--NVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLR 843
            +L GVY  N+DDLK+VV +N E+R  +A  A+ II EE ++F  W ++L+  P I  +R YA+++R  +L+K   +M   +++K R  +D   R ++NKLLH P  +++
Sbjct:  291 ELEGVYLYNIDDLKQVVNSNLEERKIEAQRAEFIIDEEVEKFVKWLNALKVSPIISSVRDYADKLRQQQLEKLFKQM-PYLNEKERETIDLAMRSLINKLLHRPTMYIK 398          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_PELPD (Glutamyl-tRNA reductase OS=Pelobacter propionicus (strain DSM 2379) GN=hemA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.487e-15
Identity = 51/130 (39.23%), Postives = 75/130 (57.69%), Query Frame = -2
Query:  442 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLET 831
            ++ VDDL+E+V AN   R ++A + + I+ +E  QF  W  SLE+ PTI  LRA  E IR AEL+K L     D+S +  + ++ ++  I+NKLLH P   L+  G   RT   T     AL ++F L+T
Sbjct:  297 LFTVDDLQEIVEANMAQRNQEASKGEEIVEQEIGQFHCWLSSLESTPTIVALRARFEEIRRAELEKTLCGW-KDLSPEAEKRLEIMTLSIMNKLLHTPTAVLKRAGQGGRTDLYT----DALRQLFDLQT 421          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_DESAA (Glutamyl-tRNA reductase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=hemA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.487e-15
Identity = 41/116 (35.34%), Postives = 72/116 (62.07%), Query Frame = -2
Query:  484 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETL 831
            VY++DDL+ V+  N ++R ++A+ A+ I+ E   ++  W + L+ VPTI  L+   E IR AE+ K L+ +  +I +K R A++ L++ I+NK++H P+Q L+  G   +   E L
Sbjct:  297 VYDIDDLQGVIDRNIDERQKEAVRAERIVDENVIKYRTWLEGLDIVPTIVSLQKKLEAIRQAEMAKSLANI-PEIDEKGREAIERLTQSIINKVMHDPIQFLKAGGHREKQKKEVL 411          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_THEYD (Glutamyl-tRNA reductase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=hemA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.554e-15
Identity = 43/131 (32.82%), Postives = 83/131 (63.36%), Query Frame = -2
Query:  439 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETD 831
            +YN+DDL++VV +N  +R ++A +A +I+ EE+++F  W +SLE+VP I  +R  AE++R  E++K  +K   D+  +   ++D L++ I+NK++H P   L+ +  +   L      + +  R+FGL+++
Sbjct:  304 LYNIDDLQDVVDSNILERKKEAEKALSIVQEETEKFFQWLNSLESVPVIVSIRNKAEQVRQEEIEKFKAKY-KDLPPELINSIDYLTQSIINKIMHSPTVALKNNCENKEIL------IFSARRLFGLDSE 427          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_PERMH (Glutamyl-tRNA reductase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=hemA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.554e-15
Identity = 47/142 (33.10%), Postives = 79/142 (55.63%), Query Frame = -2
Query:  406 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAK 831
            +YN+DDLK VV  N E+R   A+ A+ ++ EE  +F  W + L+  P I K+R YA+ IR  +L+K  ++M   +++K R  +D   R I+NKLLH P  +++    D  + +     +  L+ MF  + D    ++K + K
Sbjct:  297 LYNIDDLKVVVDKNLEERKLAALSAEMMLDEEVHKFEHWLNQLKVAPLITKIRNYADEIREYQLEKLFNQM-PYLNEKERENIDLAVRAIINKLLHRPTMYIK----DKASKENKDFYVDILDEMFSSKWDLRKLKEKEKKK 433          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_GEOLS (Glutamyl-tRNA reductase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=hemA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.767e-15
Identity = 56/136 (41.18%), Postives = 81/136 (59.56%), Query Frame = -2
Query:  433 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLE---TDTS 831
            +Y++DDL++VVAAN E R ++A +A+AII+EE  QF  W  +LE  PTI  LR   E +R AEL++ L+    D      + ++ L+   +NKLLH P   L+  G  +RT D  L+   AL  +F LE   TDT+
Sbjct:  297 LYDMDDLQQVVAANLEGRKQEADKAEAIIAEEIIQFYKWVATLEVTPTIVALRNRFEELRKAELERTLAGW-KDAPPDAEKRLEALTSAFMNKLLHQPTTVLKKAGQGNRT-DLYLD---ALRALFDLELGGTDTN 427          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_SYNFM (Glutamyl-tRNA reductase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=hemA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.014e-14
Identity = 45/103 (43.69%), Postives = 67/103 (65.05%), Query Frame = -2
Query:  523 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLR 831
            +Y++DDL+ V+  N+E+R R+A  A+ II+ E+ +F  W  +L  VPTI  LR  AE IR +EL + LS +   +S+K R AV+ L+  IV KLLH P+  L+
Sbjct:  299 LYDIDDLQGVIDLNREERKREAERAEHIIAGETLKFQEWMATLNVVPTIVALREKAETIRRSELQRTLSHL-PHMSEKDRLAVEALTEAIVKKLLHDPIVFLK 400          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_MAGSM (Glutamyl-tRNA reductase OS=Magnetococcus sp. (strain MC-1) GN=hemA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.014e-14
Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = -2
Query:  523 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLR 831
            +Y++DDL ++V  N++DR   A  A  II  E+  F  W D+L+ VPTIK++R  AE  +   L K L+  G D+S   R+ V++L+R +VNKL+H P + LR
Sbjct:  297 LYDMDDLNKIVNDNRQDRAEAAQAAMQIIEGETPLFIQWLDTLDVVPTIKQMRRKAEAAKDQLLQKHLA--GWDLSDTDRQRVENLARQLVNKLMHDPTERLR 397          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_GEOBB (Glutamyl-tRNA reductase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=hemA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.325e-14
Identity = 53/130 (40.77%), Postives = 70/130 (53.85%), Query Frame = -2
Query:  445 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHL-RCDGSDSRTLDETLENMHALNRMFGLE 831
            +Y VDDL  VVA N E R  +A +A+AI+ +E  QF  W  SLE  PTI  LR + + IR AEL K +S    D+     + +D L+  I+NKLLH P   L R D  +   L      + AL  +F LE
Sbjct:  297 LYTVDDLNGVVATNLEQRKVEAAKAEAIVEQEIGQFFKWLSSLEVTPTIVALRTHFDEIRKAELSKTISGW-KDLPPGAEKKLDALTNAIMNKLLHQPTSVLKRIDQGNRNDL-----YVDALRNLFDLE 420          
The following BLAST results are available for this feature:
BLAST of CX043605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
HEM1_GEOMG1.565e-1540.15Glutamyl-tRNA reductase OS=Geobacter metallireduce... [more]
HEM1_SULSY2.670e-1538.53Glutamyl-tRNA reductase OS=Sulfurihydrogenibium sp... [more]
HEM1_PELPD3.487e-1539.23Glutamyl-tRNA reductase OS=Pelobacter propionicus ... [more]
HEM1_DESAA3.487e-1535.34Glutamyl-tRNA reductase OS=Desulfatibacillum alken... [more]
HEM1_THEYD4.554e-1532.82Glutamyl-tRNA reductase OS=Thermodesulfovibrio yel... [more]
HEM1_PERMH4.554e-1533.10Glutamyl-tRNA reductase OS=Persephonella marina (s... [more]
HEM1_GEOLS7.767e-1541.18Glutamyl-tRNA reductase OS=Geobacter lovleyi (stra... [more]
HEM1_SYNFM1.014e-1443.69Glutamyl-tRNA reductase OS=Syntrophobacter fumarox... [more]
HEM1_MAGSM1.014e-1441.75Glutamyl-tRNA reductase OS=Magnetococcus sp. (stra... [more]
HEM1_GEOBB1.325e-1440.77Glutamyl-tRNA reductase OS=Geobacter bemidjiensis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12C02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12C02-E4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043605 ID=CX043605; Name=CX043605; organism=Citrus sinensis; type=EST; length=850bp
TTTTTTTTTTTTTTTTTCGTGATACTGCAAAAGTTCTTTCATGGAGACCG
AAAGGGAAGAAATCCCCAACAAAGACATTTACACAAGCGTGTCTCTATAT
AATGAAGTACATTAATTACATGGATTTATAGTGGTTTCATCGGTACAAGG
ATCAGGCTCACCTCTATCCTAGGAGGTTGGAAGGCACCCAAATGAGAGTT
AGGAAAAAAGTGTCTTATAACAACACTTGACGAATTGAATGATCCCACAT
AGGGATCTACACTGTTATACTATTCAAATGAAGAATACAGCAATGCCGAG
ACTCACAACAAGGTGAGGACGTTTTCCTCTTATTCAATTGAGGAAGTGAA
TGAAGTGCCATTGACAAACTGGTATTCAAAAAGCTCACTTCTGGTTTTGT
TCTATCTTGGCTCGAACCTTTTGCTCGAAAAGAGATGTATCTGTTTCAAG
GCCAAACATTCTGTTTAGAGCATGCATGTTCTCAAGGGTCTCGTCTAGAG
TCCTGCTGTCACTCCCATCACATCTCAAGTGCTGCATTGGACCATGAAGA
AGCTTATTCACGATACCACGGCTAAGGTCATCGACAGCCCTCCTTGTTTT
CTTTGAGATATCATCACCCATCTTTGATAGGCATTTATCTAACTCTGCCA
CCCTGATTCTCTCAGCATAAGCTCTCAATTTCTTAATAGTAGGAACAGTC
TCCAATGAATCCCTCCAAGCTGCAAACTGTTTTGATTCCTCAGAAATAAT
AGCCTGAGCTTCCATTGCTTTTCGGAGCCTGTCCTCTTTATTAGCAGCCA
CTACCTCCTTAAGGTCATCAACATTGTAAACCCCGTGCAGTTTCAACATC
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