CX043605

Overview
NameCX043605
Unique NameCX043605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_PELCD (Glutamyl-tRNA reductase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=hemA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.730e-14
Identity = 51/132 (38.64%), Postives = 74/132 (56.06%), Query Frame = -2
Query:  436 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDT 831
            +Y++DDL  V+  N  +R + A +A+ II +E  +F +W  SLE  P I  LR   E IR  E +K L  +   +    RRAV+ L+R IVNK+LH P+  L+  G D  T +  LE   A+ R+F L  D+
Sbjct:  297 LYDIDDLNGVIETNLRERRKAAKKAEDIIEQEIVRFYSWLRSLEATPMIVALRRQVEDIRRTETEKTLGSL-QHLDAGDRRAVEALTRAIVNKVLHSPLSVLKRAGDDI-TGEIYLE---AVRRLFDLNPDS 423          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_GEOSM (Glutamyl-tRNA reductase OS=Geobacter sp. (strain M21) GN=hemA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.730e-14
Identity = 53/130 (40.77%), Postives = 70/130 (53.85%), Query Frame = -2
Query:  445 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHL-RCDGSDSRTLDETLENMHALNRMFGLE 831
            +Y VDDL  VVA N E R  +A +A+AI+ +E  QF  W  SLE  PTI  LR + + IR AEL K +S    D+     + +D L+  I+NKLLH P   L R D  +   L      + AL  +F LE
Sbjct:  297 LYTVDDLNGVVATNLEQRKVEAAKAEAIVEQEIGQFFKWLSSLEVTPTIVALRTHFDEIRKAELSKTVSGW-KDLPPGAEKKLDALTNAIMNKLLHQPTSVLKRTDQGNRNDL-----YVDALRNLFDLE 420          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_DESAD (Glutamyl-tRNA reductase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=hemA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.730e-14
Identity = 46/132 (34.85%), Postives = 75/132 (56.82%), Query Frame = -2
Query:  436 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDT 831
            +Y++DDLK+VV  NK  R  +A++A +I+  E+  F  W +SL+  PTI  L   +E +   EL K L ++G D+  KT +A++ ++  I  KLLH P+  L+    +    DE ++      RMF L+ +T
Sbjct:  295 LYDIDDLKDVVEENKSQREDEAIKANSIVEFETLSFGNWINSLDLQPTIVDLFNRSENVAQQELAKTLKRLG-DVDAKTHKALETMAMSIGKKLLHEPVAFLKRRTEEEGKADEFVD---LARRMFNLDNET 422          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM12_ACIBL (Glutamyl-tRNA reductase 2 OS=Acidobacteria bacterium (strain Ellin345) GN=hemA2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.260e-14
Identity = 45/132 (34.09%), Postives = 82/132 (62.12%), Query Frame = -2
Query:  442 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGS--DSRTLDETLENMHALNRMFGLET 831
            VY++DDL++VV ++  DR  +A  A+AI++ E ++F     +L+ VPTI  L+ + E +R AE+D+   ++G ++S +   AVD L++GI+NK++H P+  L+      +S T+ E ++ +  L+     ET
Sbjct:  294 VYDIDDLQQVVHSHISDRKDEAAHAEAIVNAEVEKFEERLRTLDVVPTIVSLQEHLETVRQAEIDRLRGRLG-ELSPEQEMAVDALTKGIINKIMHTPITTLKTAAKEPESTTVIELVKRIFNLHEKAKDET 424          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_NATTJ (Glutamyl-tRNA reductase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=hemA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.952e-14
Identity = 47/131 (35.88%), Postives = 76/131 (58.02%), Query Frame = -2
Query:  439 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETD 831
            +Y +DDL+ VV +N ++R  +A  A+ IISEE  +F  W  + + VP I  LR  AE +R  EL+K   K+  ++S K + AVD L++ IVNK+L  P+  ++    +    D++   M  L ++F LE +
Sbjct:  299 LYTIDDLEAVVESNMQERQEEARNAELIISEEVAEFMVWYKTRDVVPLISALREKAEDVRKMELEKYHKKL-KNLSPKEQEAVDKLTKSIVNKILKEPVLRIK----EFAVEDKSELYMATLAQLFDLEDE 424          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_GEOSF (Glutamyl-tRNA reductase OS=Geobacter sp. (strain FRC-32) GN=hemA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.855e-14
Identity = 51/131 (38.93%), Postives = 73/131 (55.73%), Query Frame = -2
Query:  442 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHL-RCDGSDSRTLDETLENMHALNRMFGLET 831
            +Y VDDL  VVA N E R +++ +A+AI+ +E  QF  W  SLE  PTI  LR+  + IR AEL K ++    D+  +  + ++ L+  I+NKLLH P   L R D  +   L      + AL  +F LET
Sbjct:  297 LYTVDDLNGVVATNLEQRKKESEKAEAIVEQEIGQFFKWLSSLEVTPTIVALRSKFDEIRRAELAKTMANW-KDLPPEGEKRLEALTNAIMNKLLHQPTSVLKRSDQGNRNDL-----YVDALRNLFDLET 421          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_MYXXD (Glutamyl-tRNA reductase OS=Myxococcus xanthus (strain DK 1622) GN=hemA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.122e-13
Identity = 38/107 (35.51%), Postives = 65/107 (60.75%), Query Frame = -2
Query:  508 YNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSD 828
            Y+VDD+++ VA N   R  +A +A  ++++E  +F   R   E  P + +LR  AE I  +E+++ L  +GD +++K R++++ + R IVNKLLH P   LR  G +
Sbjct:  293 YDVDDIQKFVADNAAARAEEAQKAGVLVAQEVARFVKERALREGTPVLARLRQRAEAIARSEVERTLGALGDGLNEKQRKSIEAMGRAIVNKLLHEPTARLRAVGPE 399          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_METFK (Glutamyl-tRNA reductase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=hemA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.122e-13
Identity = 48/126 (38.10%), Postives = 66/126 (52.38%), Query Frame = -2
Query:  463 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKC--LSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLR-CDGSDSRTLDETLENMHALN 831
            +Y VDDL ++V    E+R   A EA+AII    + F  W  +   VPTI+ LR  AER R+ EL+K   L   G D      + +D LS  + NKLLHGP   L    G D   L+ TL  ++ ++
Sbjct:  292 LYTVDDLAQIVQEGMENRQEAAAEAEAIIDMRVENFMQWLKTRSAVPTIRALREQAERHRLNELEKARKLLARGHD----PAQVLDALSNALTNKLLHGPSHALNSATGEDREQLEATLRQLYQIH 413          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_GEOUR (Glutamyl-tRNA reductase OS=Geobacter uraniireducens (strain Rf4) GN=hemA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.122e-13
Identity = 51/130 (39.23%), Postives = 73/130 (56.15%), Query Frame = -2
Query:  442 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLET 831
            +Y VDDL  VVA N E R ++A +A+AI+ +E  QF  W  SLE  PTI  LR+  + IR AEL K L+    ++     + ++ L+  I+NKLLH P   L+     +R  D  ++   AL  +F LET
Sbjct:  297 LYTVDDLNGVVATNLEQRNKEAEKAEAIVEQEIGQFFKWLSSLEVTPTIVALRSKFDEIRRAELAKTLANW-KELPPDAEKRLEALTSAIMNKLLHQPTSVLKRAEQGNRN-DLYID---ALRNLFELET 421          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_DESRM (Glutamyl-tRNA reductase OS=Desulfotomaculum reducens (strain MI-1) GN=hemA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.122e-13
Identity = 39/103 (37.86%), Postives = 65/103 (63.11%), Query Frame = -2
Query:  523 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLR 831
            +Y+VD L+ VV AN E+R R A++A+ II EE  +F  W  +   VPTI  L+   E I+  EL +  +++G D++++ ++ +  L+  IVN+LLH P+  L+
Sbjct:  297 LYDVDHLQNVVDANLEERRRAAVQAEGIIEEELNEFMRWLSTRFVVPTITALKKMGEEIKQRELVRAYNRLG-DLTEREKKIIGSLANSIVNQLLHNPVIKLK 398          
The following BLAST results are available for this feature:
BLAST of CX043605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
HEM1_PELCD1.730e-1438.64Glutamyl-tRNA reductase OS=Pelobacter carbinolicus... [more]
HEM1_GEOSM1.730e-1440.77Glutamyl-tRNA reductase OS=Geobacter sp. (strain M... [more]
HEM1_DESAD1.730e-1434.85Glutamyl-tRNA reductase OS=Desulfovibrio salexigen... [more]
HEM12_ACIBL2.260e-1434.09Glutamyl-tRNA reductase 2 OS=Acidobacteria bacteri... [more]
HEM1_NATTJ2.952e-1435.88Glutamyl-tRNA reductase OS=Natranaerobius thermoph... [more]
HEM1_GEOSF3.855e-1438.93Glutamyl-tRNA reductase OS=Geobacter sp. (strain F... [more]
HEM1_MYXXD1.122e-1335.51Glutamyl-tRNA reductase OS=Myxococcus xanthus (str... [more]
HEM1_METFK1.122e-1338.10Glutamyl-tRNA reductase OS=Methylobacillus flagell... [more]
HEM1_GEOUR1.122e-1339.23Glutamyl-tRNA reductase OS=Geobacter uraniireducen... [more]
HEM1_DESRM1.122e-1337.86Glutamyl-tRNA reductase OS=Desulfotomaculum reduce... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12C02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12C02-E4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043605 ID=CX043605; Name=CX043605; organism=Citrus sinensis; type=EST; length=850bp
TTTTTTTTTTTTTTTTTCGTGATACTGCAAAAGTTCTTTCATGGAGACCG
AAAGGGAAGAAATCCCCAACAAAGACATTTACACAAGCGTGTCTCTATAT
AATGAAGTACATTAATTACATGGATTTATAGTGGTTTCATCGGTACAAGG
ATCAGGCTCACCTCTATCCTAGGAGGTTGGAAGGCACCCAAATGAGAGTT
AGGAAAAAAGTGTCTTATAACAACACTTGACGAATTGAATGATCCCACAT
AGGGATCTACACTGTTATACTATTCAAATGAAGAATACAGCAATGCCGAG
ACTCACAACAAGGTGAGGACGTTTTCCTCTTATTCAATTGAGGAAGTGAA
TGAAGTGCCATTGACAAACTGGTATTCAAAAAGCTCACTTCTGGTTTTGT
TCTATCTTGGCTCGAACCTTTTGCTCGAAAAGAGATGTATCTGTTTCAAG
GCCAAACATTCTGTTTAGAGCATGCATGTTCTCAAGGGTCTCGTCTAGAG
TCCTGCTGTCACTCCCATCACATCTCAAGTGCTGCATTGGACCATGAAGA
AGCTTATTCACGATACCACGGCTAAGGTCATCGACAGCCCTCCTTGTTTT
CTTTGAGATATCATCACCCATCTTTGATAGGCATTTATCTAACTCTGCCA
CCCTGATTCTCTCAGCATAAGCTCTCAATTTCTTAATAGTAGGAACAGTC
TCCAATGAATCCCTCCAAGCTGCAAACTGTTTTGATTCCTCAGAAATAAT
AGCCTGAGCTTCCATTGCTTTTCGGAGCCTGTCCTCTTTATTAGCAGCCA
CTACCTCCTTAAGGTCATCAACATTGTAAACCCCGTGCAGTTTCAACATC
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