CX043533
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043533 vs. ExPASy Swiss-Prot
Match: ISPA_ECOLI (Geranyltranstransferase OS=Escherichia coli (strain K12) GN=ispA PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.205e-13 Identity = 43/106 (40.57%), Postives = 56/106 (52.83%), Query Frame = 2 Query: 488 DFKSYMIQKASTVNQALDAAVSLK--DPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 799 DF + NQAL ++ + E+M+Y L GGKR+RP L A + G + A ++E IH SLIHDDLP MD+D LRRG PT H +GE Sbjct: 2 DFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGE 107
BLAST of CX043533 vs. ExPASy Swiss-Prot
Match: IDSA_METJA (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanocaldococcus jannaschii GN=idsA PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.186e-13 Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 2 Query: 491 FKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 799 F ++QK +++ L V D K++ + ++ L AGGKR+RP L + L +PAA ++E+IH +LIHDD+ MDND RRGKPT H +YGE Sbjct: 13 FDKNILQK---IDEELKTYVDKDD--KLYNASKHLLFAGGKRIRPYLTVVTYMLKKDDIEEVLPAAAAVELIHNYTLIHDDI--MDNDDERRGKPTVHVVYGE 108
BLAST of CX043533 vs. ExPASy Swiss-Prot
Match: GGPS_SULSO (Geranylgeranyl pyrophosphate synthetase OS=Sulfolobus solfataricus GN=gds PE=3 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 9.325e-13 Identity = 34/76 (44.74%), Postives = 52/76 (68.42%), Query Frame = 2 Query: 572 IHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 799 + E+ + AGGKR+RP++ +++ DL+GG A AA ++E++H +L+HDD+ MDND LRRG PT H +GE Sbjct: 32 LEEASFHLFTAGGKRLRPLVLVSSSDLIGGDRERAYKAAAAVEILHNFTLVHDDI--MDNDGLRRGLPTVHVKWGE 105
BLAST of CX043533 vs. ExPASy Swiss-Prot
Match: CRTE_PANAN (Geranylgeranyl pyrophosphate synthetase OS=Pantoea ananas GN=crtE PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.591e-12 Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 2 Query: 581 SMRYSLLAGGKRVRPVLCLAACDLVG---GHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 799 +MR LA GKR+RP+L L +G H+ + + AC++EM+H SLI DD+PCMD+ LRRG+PT H+ YGE Sbjct: 43 AMREGALAPGKRIRPMLLLLTARDLGCAVSHDGL-LDLACAVEMVHAASLILDDMPCMDDAKLRRGRPTIHSHYGE 117
BLAST of CX043533 vs. ExPASy Swiss-Prot
Match: IDSA_METTH (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanobacterium thermoautotrophicum GN=idsA PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.077e-12 Identity = 36/91 (39.56%), Postives = 57/91 (62.64%), Query Frame = 2 Query: 527 NQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 799 ++ + ++S P + + + + AGGK++RP L L + + VGG A A +IE+IHT SLIHDD+ MD+D +RRG+P H ++GE Sbjct: 16 DERIRESISDITPETLLRASEHLITAGGKKIRPSLALLSSEAVGGDPGDAAGVAAAIELIHTFSLIHDDI--MDDDEIRRGEPAVHVLWGE 104
BLAST of CX043533 vs. ExPASy Swiss-Prot
Match: CRTE_RHOS4 (Geranylgeranyl pyrophosphate synthetase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=crtE PE=3 SV=3) HSP 1 Score: 72.7886 bits (177), Expect = 2.713e-12 Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 2 Query: 563 PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHE-SMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 799 P K+ ++ Y++ GG R+RP L L+ G +++ AA ++E+IH SL+HDDLPC D+ +RRGKPT H Y E Sbjct: 24 PSKLATALDYAVTPGGARIRPTLLLSVATACGDDRPALSDAAAVALELIHCASLVHDDLPCFDDAEIRRGKPTVHRAYSE 103
BLAST of CX043533 vs. ExPASy Swiss-Prot
Match: CRTE_ESCVU (Geranylgeranyl pyrophosphate synthetase OS=Escherichia vulneris GN=crtE PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.713e-12 Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 2 Query: 581 SMRYSLLAGGKRVRPVLCL-AACDL-VGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 799 +MR ++A GKR+RP+L L AA DL G + AC++E+ HT SL+ DD+PCMDN LRRG+PT H +GE Sbjct: 42 AMREGVMAPGKRIRPLLMLLAARDLRYQGSMPTLLDLACAVELTHTASLMLDDMPCMDNAELRRGQPTTHKKFGE 116
BLAST of CX043533 vs. ExPASy Swiss-Prot
Match: ISPA_BUCAP (Geranyltranstransferase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ispA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.000e-11 Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 2 Query: 572 IHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 799 + +M+YS L+GGKR+R L A + + + + ++E++H+ SLIHDDLPC+DND RRGK + H YGE Sbjct: 32 LFRAMKYSTLSGGKRLRACLIYATGETFQVNIAALDVISAAVELVHSYSLIHDDLPCIDNDYFRRGKISCHIKYGE 107
BLAST of CX043533 vs. ExPASy Swiss-Prot
Match: ISPA_BUCAI (Geranyltranstransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ispA PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.918e-11 Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 2 Query: 578 ESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 799 ++M+YS+ +G KR+R L + D+ + + + +IE IH+ SLIHDDLPCMDND RRGK + H YGE Sbjct: 34 KAMKYSVFSGSKRLRSSLIYSTGDVFKVNITTLDVISTAIEFIHSYSLIHDDLPCMDNDNFRRGKISCHVKYGE 107 The following BLAST results are available for this feature:
BLAST of CX043533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043533 ID=CX043533; Name=CX043533; organism=Citrus sinensis; type=EST; length=842bpback to top |