CX043528

Overview
NameCX043528
Unique NameCX043528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043528 vs. ExPASy Swiss-Prot
Match: CHSY_FRAAN (Chalcone synthase RJ5 (Fragment) OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.392e-36
Identity = 72/96 (75.00%), Postives = 79/96 (82.29%), Query Frame = -3
Query:  310 ISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 597
            I+DWNS+FWIAHPGGPAILDQV           +ATR +LSEYGNMSSACVLFILDE+R+KSA     TTGEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:    2 ITDWNSLFWIAHPGGPAILDQVEAKLALKPEKLEATRHILSEYGNMSSACVLFILDEVRRKSAANGHKTTGEGLEWGVLFGFGPGLTVETVVLHSV 97          
BLAST of CX043528 vs. ExPASy Swiss-Prot
Match: CHSB_IPOTR (Chalcone synthase B (Fragment) OS=Ipomoea triloba GN=CHSB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.654e-36
Identity = 72/132 (54.55%), Postives = 98/132 (74.24%), Query Frame = -3
Query:  412 VIVGPDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKS 807
            +IVG DP   +E PL++LVS++QTI+P++D  +   LRE+GLTFH  + VP ++++N+E  L +AF P GISDWNSIFW+ HPGG AI+D+V           +A+R VLSEYGN++SACVLFILDE+R KS
Sbjct:  230 MIVGTDPRPDLETPLFELVSSAQTIVPNTDSHLKLTLREMGLTFHCSRAVPSVLAENVEDCLVKAFEPYGISDWNSIFWVFHPGGNAIVDRVEERLGLGAQRFRASRDVLSEYGNLTSACVLFILDEVRNKS 361          
BLAST of CX043528 vs. ExPASy Swiss-Prot
Match: CHS4_TRISU (Chalcone synthase 4 (Fragment) OS=Trifolium subterraneum GN=CHS4 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.067e-34
Identity = 66/90 (73.33%), Postives = 81/90 (90.00%), Query Frame = -3
Query:  538 VIVGPDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILD 807
            +IVG DP   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLKDVPG++SKNI+K+L EAF P+GISD+NSIFWIAHPGGPAILD
Sbjct:  222 LIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLGISDYNSIFWIAHPGGPAILD 311          
BLAST of CX043528 vs. ExPASy Swiss-Prot
Match: CHSC_IPOPU (Chalcone synthase C (Fragment) OS=Ipomoea purpurea GN=CHSC PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.650e-33
Identity = 70/123 (56.91%), Postives = 87/123 (70.73%), Query Frame = -3
Query:  439 VIVGPDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLF 807
            VIVG +P   +E PL++LVS +QT +PD+D  +   LRE+GLTFH  K VP LI++NIE  L +AF P GISDWNSIFWI HPGG AILD V           +A+R VLS+YGN++SACVLF
Sbjct:  228 VIVGTEPRPGLETPLFELVSAAQTTIPDTDSYLKLQLREMGLTFHCSKAVPSLITQNIEDCLVKAFEPFGISDWNSIFWILHPGGNAILDGVEEKLGLEPEKLRASRDVLSQYGNLTSACVLF 350          
BLAST of CX043528 vs. ExPASy Swiss-Prot
Match: CHSA_IPONI (Chalcone synthase A (Fragment) OS=Ipomoea nil GN=CHSA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.884e-31
Identity = 67/120 (55.83%), Postives = 85/120 (70.83%), Query Frame = -3
Query:  448 VIVGPDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSAC 807
            VIVG +P   +E PL++LVS +QT +PD+D  +  HLRE+GLTFH  K VP LI++N+E  L +AF P GISDWNSIFWI HPGG AILD+V           +A+R VLSE GN++SAC
Sbjct:  225 VIVGTEPRPGLETPLFELVSAAQTTIPDTDSHLKLHLREMGLTFHCSKAVPSLITQNVEDYLVKAFEPFGISDWNSIFWILHPGGIAILDRVEEKLGLEPEKLRASRDVLSESGNLTSAC 344          
The following BLAST results are available for this feature:
BLAST of CX043528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHSY_FRAAN7.392e-3675.00Chalcone synthase RJ5 (Fragment) OS=Fragaria anana... [more]
CHSB_IPOTR9.654e-3654.55Chalcone synthase B (Fragment) OS=Ipomoea triloba ... [more]
CHS4_TRISU1.067e-3473.33Chalcone synthase 4 (Fragment) OS=Trifolium subter... [more]
CHSC_IPOPU7.650e-3356.91Chalcone synthase C (Fragment) OS=Ipomoea purpurea... [more]
CHSA_IPONI1.884e-3155.83Chalcone synthase A (Fragment) OS=Ipomoea nil GN=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11F09_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11F09-K17-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043528 ID=CX043528; Name=CX043528; organism=Citrus sinensis; type=EST; length=809bp
CCCCCCCTTTTTACTTTATAACGATGATTTTTTTTCCCACATTAAAATCA
TGACCTTTGGGCATTTACAGATTCAGGACATCCTGTTACAAATTTATTGC
TTTCTCAAATTCCCAAGAATTTATGCATAAACACAAAGCGTTGCCCAGGT
TTGATGACGTCATAAGAGAAAAGGTACGATGCCTTAAATTCAATTGACAA
AACTAAACCTTCACACGATCAACCAATAATTCAAGAGTGAAAGCATACAA
CATAAAGTTACTGAACTACTAAACATACTGATGGAGTTCTCACTTCAAGC
TTTGATGGGGACACTGTGCAGCACAACGGTCTCGACGGTGAGCCCCGGCC
CGAACCCGAACAGCACACCCCAATCTAGCCCTTCGCCGGTGGTGGCTTTC
GCTTCCTCAGCAGACTTCTTTCTCATCTCGTCAAGGATGAACAGGACACA
AGCGCTTGACATGTTACCGTACTCACTCAACACTTGACGTGTGGCCTTCA
GCTTCTCCTCTTTGAGGCCGAGTTTAGACTCCACTTGGTCCAGAATTGCG
GGCCCACCGGGGTGAGCGATCCAGAATATCGAGTTCCAGTCGCTGATGCC
AACCGGGGCGAACGCTTCCGACAGGCTTTTCTCTATATTCTTTGAGATCA
AGCCGGGGACGTCTTTAAGCAAATGGAAAGTGAGACCGACTTCGCGCAAG
TGTCCGTCAATTGCACCGTCAGAGTCAGGGAGGATCGTCTGCGAAGTCGA
CACAAGCTGATACAACGGACGCTCGACCGACGTGTCAGGATCGGGACCCA
CGATCACAG
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