CX043513

Overview
NameCX043513
Unique NameCX043513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043513 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.392e-12
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 2
Query:  359 EASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIE-KEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQI 700
            +A A   T  D  E P A+ F  D+PG+              L +SG+R  E KE++   + R+ER  G F R+F+LPENA +D+I A   +GVL VTV K    +    + IQ+
Sbjct:   38 DAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVTVQKLPPPEPKKPKTIQV 152          
BLAST of CX043513 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.785e-12
Identity = 40/116 (34.48%), Postives = 62/116 (53.45%), Query Frame = 2
Query:  359 EASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSD--TWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQI 700
            +A A   T  D KE P ++VF AD+PG+              L +SG+R   ++D+ D   + R+ER  G F R+F LPENA ++ I A  ++GVL VTV K    +    + +++
Sbjct:   49 DAKAMAATPADVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVTVEKLPPPEPKKPKTVEV 164          
BLAST of CX043513 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.785e-12
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  359 EASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNI----EKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQI 700
            +A A   T  D K+ P A+ F  D+PGL              L ISG+R      E++++S  + R+ER  G F R+F LP+NA +D+I A  ++GVLTVTV K    +    + I++
Sbjct:   46 DARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVTVEKLPPPEPKKPKTIEV 163          
BLAST of CX043513 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.718e-11
Identity = 43/116 (37.07%), Postives = 62/116 (53.45%), Query Frame = 2
Query:  386 VDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQI--------------SGQRNIEKEDKSD--TWHRVERSSGMFSR---RFRLPENAKMDRIKASMENGVLTVTVPKAEEAKK 676
            +DW+ETP AHVF+ DLPGL              L++              +G+ + E+E+++D   WH  ER++G       +FRLPE+A  D   A M +GVLTVTVPK +  K+
Sbjct:   29 MDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLTVTVPKRKGKKR 144          
BLAST of CX043513 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.284e-11
Identity = 41/114 (35.96%), Postives = 59/114 (51.75%), Query Frame = 2
Query:  359 EASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQI 700
            +A A   T  D KE   A+ F  D+PGL              L ISG+R  E+ + +  + R+ER  G F R+F LP+NA +D++ A   +GVLTVTV K    +    + I+I
Sbjct:   39 DARAMAATPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRREEREDAK-YLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEI 151          
The following BLAST results are available for this feature:
BLAST of CX043513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS176_ARATH4.392e-1236.5217.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP22_IPONI9.785e-1234.4818.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP18_ORYSJ9.785e-1235.5918.0 kDa class II heat shock protein OS=Oryza sati... [more]
HS178_ORYSJ3.718e-1137.0717.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP23_MAIZE8.284e-1135.9617.0 kDa class II heat shock protein OS=Zea mays G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11E10_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11E10-I19-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043513 ID=CX043513; Name=CX043513; organism=Citrus sinensis; type=EST; length=812bp
GAAAAATCTAAAATCTAATCCAGAAGGTAAGCCAACGATCTCGAAAGTAC
TAGAATACGCTTCCCACCAATATAATTAACCCAATCACCTGCACCATTCC
GCACCAGAAAGCAACTTTCCCAAAGGCATTTACTTTTTCTGCATTCGGTG
ACAAGTACTTTTTATTAGTCGATAGAGGAAAGAGAGAGGGAAAACAAAAA
AAGGAAAGATAAGGAAAATGTCGCTGATTCCAAGCTTCTTCGGCAACCGA
CGCAGCAGTGTGTTCGATCCGTTCTCACTCGACGTTTGGGATCCATTCAG
GGACTTCCCTCTCTCTGCTTCTTCTTTTCCATCTGCGGTGTCCTCTCAGT
TCCCTGGAGAAGCCTCTGCTTTCGTTAATACCCGCGTGGACTGGAAGGAA
ACCCCAGAGGCCCACGTGTTCAAGGCTGATCTTCCGGGGCTAAGGAAAGA
GGAGGTGAAGGTCGAGGTTGAGGATGACAGGGTGCTTCAGATAAGCGGGC
AGAGGAACATTGAGAAGGAAGACAAGAGCGACACGTGGCATCGCGTGGAG
CGTAGCAGTGGCATGTTCTCGAGGAGGTTCAGGCTGCCGGAGAATGCGAA
GATGGACCGCATTAAGGCTTCAATGGAGAACGGTGTGCTTACTGTTACCG
TTCCTAAAGCGGAGGAGGCCAAGAAAGCTAATGTCAGGGCTATTCAAATC
TCTGGCTGACTAATTAATAAACAAAGACAATAAATAATTGTATGATAAGT
TTTATGGTTTGGTTTGGTCTATGTATCATGTGAAGTCTGTCTTTGTCTAC
TGAGATCGAGTG
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