CX043497

Overview
NameCX043497
Unique NameCX043497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.086e-29
Identity = 71/173 (41.04%), Postives = 104/173 (60.12%), Query Frame = -1
Query:  286 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 804
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+   ++F     W +E   QASPS        + GNK D+   N R+V  ++A+A+ A   ++ + ETSAK   NV   F  IAK   K+EPQ
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS----IVIALAGNKADL--ANKRMVEYEEAQAY-ADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQ 187          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.086e-29
Identity = 71/173 (41.04%), Postives = 104/173 (60.12%), Query Frame = -1
Query:  286 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 804
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+   ++F     W +E   QASPS        + GNK D+   N R+V  ++A+A+ A   ++ + ETSAK   NV   F  IAK   K+EPQ
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS----IVIALAGNKADL--ANKRMVEYEEAQAY-ADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQ 187          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RAB5B_HUMAN (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.086e-29
Identity = 71/173 (41.04%), Postives = 104/173 (60.12%), Query Frame = -1
Query:  286 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 804
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+   ++F     W +E   QASPS        + GNK D+   N R+V  ++A+A+ A   ++ + ETSAK   NV   F  IAK   K+EPQ
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS----IVIALAGNKADL--ANKRMVEYEEAQAY-ADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQ 187          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.086e-29
Identity = 68/165 (41.21%), Postives = 107/165 (64.85%), Query Frame = -1
Query:  316 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 810
            L KV+++GDSGVGK++L++++   +F  + K+TIG +F T+ +Q E R    QIWDTAGQER++++  A+YRGA   +LVYDV    +F+N++ W +E    A      N   +++GNKTD+   + R V+ + A+++ A K  + + ETSA E  NVE AF+ I
Sbjct:   12 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD----SNIVIMLIGNKTDLK--HLRAVATEDAQSY-AEKEGLSFIETSALEALNVEKAFQTI 169          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.031e-29
Identity = 80/207 (38.65%), Postives = 119/207 (57.49%), Query Frame = -1
Query:  214 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA--------KNALKNEPQEEDYLPDTIDVGGGQQQRSSGCEC 810
            L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+   KSFDN+ NW       AS +D E    ++LGNK DV+  + R VS+++ +      G I + ETSAK   NVE AF  +A        K    N PQ  +     + +   QQ+RSS   C
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEK---MILGNKCDVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFYTLARDIKAKMDKKLEGNSPQGSN---QGVKITPDQQKRSSFFRC 204          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.031e-29
Identity = 76/195 (38.97%), Postives = 118/195 (60.51%), Query Frame = -1
Query:  244 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPDTIDV-----GGG 813
            +L K++++GDSGVGKT ++ ++ +  F+  + +TIG DF  K V+   +   LQIWDTAGQERF ++  ++YRGA   +LVYD+   KSF+N++ W       A+    E+   ++LGNK D++  + RVV + K +   A +  I +FETSAK   N+E AF  +A++ L+  P +E   PD  +V     GGG
Sbjct:    8 LLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHAN----EDVERMLLGNKCDME--DKRVVLKSKGEQ-IAREHAIRFFETSAKANINIEKAFLTLAEDILQKTPVKE---PDRENVDISTTGGG 192          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.264e-29
Identity = 64/165 (38.79%), Postives = 108/165 (65.45%), Query Frame = -1
Query:  316 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 810
            L K +++GDSGVGK++L+ ++   +F+ + K+TIG +F T+ +  +++    QIWDTAGQER++++  A+YRGA   ++VYD+    SFDN+  W +E    A      N   +++GNKTD+   + R VS ++A+A+ A++ N+ + ETSA +  NVE AF+ +
Sbjct:   10 LFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHAD----SNIVIMLVGNKTDL--LHLRAVSTEEAQAF-AAENNLSFIETSAMDASNVEEAFQTV 167          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.264e-29
Identity = 80/207 (38.65%), Postives = 119/207 (57.49%), Query Frame = -1
Query:  214 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA--------KNALKNEPQEEDYLPDTIDVGGGQQQRSSGCEC 810
            L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+   KSFDN+ NW       AS +D E    ++LGNK DV+  + R VS+++ +      G I + ETSAK   NVE AF  +A        K    N PQ  +     + +   QQ+RSS   C
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEK---MILGNKRDVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSN---QGVKITPDQQKRSSFFRC 204          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.264e-29
Identity = 80/207 (38.65%), Postives = 119/207 (57.49%), Query Frame = -1
Query:  214 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA--------KNALKNEPQEEDYLPDTIDVGGGQQQRSSGCEC 810
            L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+   KSFDN+ NW       AS +D E    ++LGNK DV+  + R VS+++ +      G I + ETSAK   NVE AF  +A        K    N PQ  +     + +   QQ+RSS   C
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEK---MILGNKCDVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSN---QGVKITPDQQKRSSFFRC 204          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.264e-29
Identity = 80/207 (38.65%), Postives = 119/207 (57.49%), Query Frame = -1
Query:  214 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA--------KNALKNEPQEEDYLPDTIDVGGGQQQRSSGCEC 810
            L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+   KSFDN+ NW       AS +D E    ++LGNK DV+  + R VS+++ +      G I + ETSAK   NVE AF  +A        K    N PQ  +     + +   QQ+RSS   C
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEK---MILGNKCDVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSN---QGVKITPDQQKRSSFFRC 204          
The following BLAST results are available for this feature:
BLAST of CX043497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5B_PONAB3.086e-2941.04Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5... [more]
RAB5B_MOUSE3.086e-2941.04Ras-related protein Rab-5B OS=Mus musculus GN=Rab5... [more]
RAB5B_HUMAN3.086e-2941.04Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5... [more]
RAA2A_ARATH3.086e-2941.21Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RAB8A_BOVIN4.031e-2938.65Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RAB10_DISOM4.031e-2938.97Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
YPT3_SCHPO5.264e-2938.79GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RAB8A_PONAB5.264e-2938.65Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB8A_MACFA5.264e-2938.65Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN5.264e-2938.65Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11D11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11D11-G21-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043497 ID=CX043497; Name=CX043497; organism=Citrus sinensis; type=EST; length=819bp
TTACAAAGCATAAAACAATTAGACTCCAGATGATATAGAAAAAGAAAGGG
TAAAAACAATGCAAACATAGTGGAATACAGTCCAAGGCACTAGTATTGTA
CATTGAATTTGATTAATATTCCCTGCTTTATTGCTGCATGGCAAATTGAT
CTGACGGTGACCTCACTTGCATTCCACCAGTTACAACAGAACCACCTATG
AGCCCCAGTTTTAACATTCACAACCCGAAGATCTCTGCTGCTGTCCACCG
CCGACATCAATGGTGTCCGGAAGATAATCTTCTTCTTGAGGTTCATTTTT
CAGAGCGTTTTTGGCTATACACTCAAAAGCAGCTTCTACATTGAAACCTT
CTTTGGCAGATGTTTCAAAATAAGGGATATTCCCTTTGGAAGCACACCAT
GCCTTTGCCTTCTTCTCAGACACCACTCGACTATTGCCACCATCAACATC
GGTCTTGTTCCCCAATACAACAAATGGAAAGTTTTCAGGATCAGAAGGGC
TGGCCTGAATCAGGAACTCCTCTCGCCAATTGTTGAGATTATCAAATGAT
TTCATGACATTCACATCATACACAAGAACACAACAGTCTGCGCCACGGTA
GAAAGCCACTCCAAGACTTTGAAACCTTTCCTGTCCAGCTGTATCCCATA
TCTGCAAAGTGAAAAGCCTGTCCTCAAATTGGACTTCTTTGGTCAAGAAA
TCTGCCCCAATGGTTGCTTTATACTGGTTACTAAACTTGCGGTTCACATA
TTGATTCATCAAAGAAGTCTTCCCAACCCCGCTGTCTCCGAGGATTATAA
CTTTGAGGAGCATGCGTCT
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