CX043497

Overview
NameCX043497
Unique NameCX043497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.264e-29
Identity = 80/207 (38.65%), Postives = 119/207 (57.49%), Query Frame = -1
Query:  214 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA--------KNALKNEPQEEDYLPDTIDVGGGQQQRSSGCEC 810
            L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+   KSFDN+ NW       AS +D E    ++LGNK DV+  + R VS+++ +      G I + ETSAK   NVE AF  +A        K    N PQ  +     + +   QQ+RSS   C
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEK---MILGNKCDVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSN---QGVKITPDQQKRSSFFRC 204          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RAB5C_CHICK (Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.264e-29
Identity = 76/198 (38.38%), Postives = 107/198 (54.04%), Query Frame = -1
Query:  220 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPD---TIDVGGGQQQRSSGC 804
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+    +F    NW +E   QASP    N    + GNK D+     R V  + A+ + A   ++ + ETSAK   NV   F  IAK   KNEPQ     P     +D+    Q   S C
Sbjct:   23 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASP----NIVIALAGNKADL--ATKRAVDFQDAQTY-ADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAPGGPGRNRVVDLQESSQPSRSQC 213          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.264e-29
Identity = 78/206 (37.86%), Postives = 117/206 (56.80%), Query Frame = -1
Query:  220 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYL--PDTIDV-------GGGQQQRSSGC 810
            L+K++++GDSGVGK+ L+ ++ +  F+  +  TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYDV    SF+N+ NW       AS    +N   +++GNK D+D  + R V   K +A  A +  I +FETSAK   NVE  F  I ++ +K    + D    P TI +       G GQ  + S C
Sbjct:   15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMD-ESKRAVPTAKGQA-LADEYGIKFFETSAKTNLNVEEVFFSIGRD-IKQRLSDTDSRAEPATIKISQTDQAAGAGQATQKSAC 213          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.876e-29
Identity = 66/165 (40.00%), Postives = 107/165 (64.85%), Query Frame = -1
Query:  316 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 810
            L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ +Q + +    QIWDTAGQER++++  A+YRGA   +LVYD+    +F+N+  W +E    A      N   +++GNK+D+   + R V  + A+A+C  +G + + ETSA E  NVE AF+ I
Sbjct:   12 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHAD----SNIVIMLVGNKSDLK--HLRDVQTEVAQAFCEREG-LSFIETSALESTNVEKAFQQI 169          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RB27A_PIG (Ras-related protein Rab-27A OS=Sus scrofa GN=RAB27A PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.876e-29
Identity = 78/219 (35.62%), Postives = 123/219 (56.16%), Query Frame = -1
Query:  214 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ--EEDYLPDTIDVGGG--------QQQRSSGCEC 810
            L+K + LGDSGVGKTS++ QY + KF++++  T+G DF  K V +            +   LQ+WDTAGQERF+SL  AF+R A   +L++D+   +SF N+ NW  +  + A   +P+    V+ GNK+D++  + RVV E++A+   A K  IPYFETSA  G NV  A E +    +K   +  ++ ++P+ +    G        +++    C C
Sbjct:    9 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAIGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPD---IVLCGNKSDLE--DQRVVKEEEARG-LAEKYGIPYFETSAANGTNVSLAIETLLDLIMKRMERCVDKSWIPEGVVRSNGHTSADPLNEEKEKGSCGC 221          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.876e-29
Identity = 77/204 (37.75%), Postives = 113/204 (55.39%), Query Frame = -1
Query:  220 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA---KNALKNEPQEEDYLPD----TIDVGGGQQQRSSGC 810
            L+K++++GDSGVGK+ L+ ++ +  F+  +  TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYDV    SF+N+ NW       AS    +N   +++GNK D+D  + R V   K +A  A +  I +FETSAK   NVE  F  IA   K  L +    ++  P       D  G Q    S C
Sbjct:   15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMD-ESKRAVPTAKGQA-LADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEAQPSITIKPADQSGNQAAAKSAC 212          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RABN1_DICDI (Ras-related protein RabN1 OS=Dictyostelium discoideum GN=rabN1 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.876e-29
Identity = 76/210 (36.19%), Postives = 112/210 (53.33%), Query Frame = -1
Query:  220 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEF----LIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS------KGNIPYFETSAKEGFNVEAAFECIAKNALK--NEPQE--EDYLPDTIDVGGGQQQRSSGC 807
            LK+I++GD   GKT++ N++  RKF   Y      D   KE+  +D L     WDTAGQERF SL   FYR A+CCVL +D++  +SF NL+ W  E     L     S+  + PFV++G K+D+     + +S ++ + WC +         + YFETSAK   N++  F  I+K AL   N  Q+  E  L  T+++      +SS C
Sbjct:    9 LKIIMIGDYNSGKTAIFNEFAGRKFGI-YTCPSTFDLFYKEIMIDDELVGYHFWDTAGQERFTSLNRHFYRNANCCVLCFDIHNEESFKNLDKWITELHSKCLENGLESEKLSPPFVLIGTKSDIP-RTDKSISNERIEQWCKNIEDQRIIDKVHYFETSAKNSKNIKEPFNIISKFALNYFNSMQKLNESKLNPTLEISNNNNIKSSSC 216          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RAB5B_CHICK (Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.876e-29
Identity = 75/198 (37.88%), Postives = 111/198 (56.06%), Query Frame = -1
Query:  220 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPDT---IDVGGGQQQRSSGC 804
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+   ++F     W +E   QASPS        + GNK D+   + R+V  ++A+A+ A   ++ + ETSAK   NV   F  IAK   K+EPQ           +D+    QQ  S C
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS----IVIALAGNKADL--ASKRMVEYEEAQAY-ADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQSTSGAAGRSRGVDLHEQTQQNKSQC 212          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.173e-28
Identity = 73/202 (36.14%), Postives = 116/202 (57.43%), Query Frame = -1
Query:  220 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA----KNALKNEPQEEDYLPDTIDVGGGQQQRSSGC 813
            +L+K++++GDSGVGK+ L+ ++   +F+  +  TIG DF  + +   ++   LQ+WDTAGQERF+++  A+YRGA   +LVYDV   KSF+N+ NW +     A+    E    +++GNK D+D    RVVS ++ +A  A K  IP+ E S+K   NVE  F  +A        K +  E       I++  G++  +S C
Sbjct:   10 LLIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYAN----EGVELILVGNKCDLD--EKRVVSTEQGQA-LADKFGIPFLEASSKTNINVEECFYSVATRIRDTVAKTKGNESG--SGGINIAEGEENSASKC 202          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.173e-28
Identity = 65/165 (39.39%), Postives = 104/165 (63.03%), Query Frame = -1
Query:  316 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 810
            L K++++GDSGVGK+++++++   +F  + K+TIG +F T+ +Q E +    QIWDTAGQER++++  A+YRGA   +LVYD+   ++FDN+  W  E    A      N   ++ GNK+D+   + R VSE+  +A  A K  + + ETSA E  N+E AF+ I
Sbjct:   12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD----SNIVIMMAGNKSDLK--HLRAVSEEDGQA-LAEKEGLSFLETSALEAVNIEKAFQTI 169          
The following BLAST results are available for this feature:
BLAST of CX043497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8A_CANFA5.264e-2938.65Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB5C_CHICK5.264e-2938.38Ras-related protein Rab-5C OS=Gallus gallus GN=RAB... [more]
ARA3_ARATH5.264e-2937.86Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
YPTC6_CHLRE6.876e-2940.00Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB27A_PIG6.876e-2935.62Ras-related protein Rab-27A OS=Sus scrofa GN=RAB27... [more]
RB1BV_BETVU6.876e-2937.75Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RABN1_DICDI6.876e-2936.19Ras-related protein RabN1 OS=Dictyostelium discoid... [more]
RAB5B_CHICK6.876e-2937.88Ras-related protein Rab-5B OS=Gallus gallus GN=RAB... [more]
RYL1_YARLI1.173e-2836.14Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RB2BV_BETVU1.173e-2839.39Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11D11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11D11-G21-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043497 ID=CX043497; Name=CX043497; organism=Citrus sinensis; type=EST; length=819bp
TTACAAAGCATAAAACAATTAGACTCCAGATGATATAGAAAAAGAAAGGG
TAAAAACAATGCAAACATAGTGGAATACAGTCCAAGGCACTAGTATTGTA
CATTGAATTTGATTAATATTCCCTGCTTTATTGCTGCATGGCAAATTGAT
CTGACGGTGACCTCACTTGCATTCCACCAGTTACAACAGAACCACCTATG
AGCCCCAGTTTTAACATTCACAACCCGAAGATCTCTGCTGCTGTCCACCG
CCGACATCAATGGTGTCCGGAAGATAATCTTCTTCTTGAGGTTCATTTTT
CAGAGCGTTTTTGGCTATACACTCAAAAGCAGCTTCTACATTGAAACCTT
CTTTGGCAGATGTTTCAAAATAAGGGATATTCCCTTTGGAAGCACACCAT
GCCTTTGCCTTCTTCTCAGACACCACTCGACTATTGCCACCATCAACATC
GGTCTTGTTCCCCAATACAACAAATGGAAAGTTTTCAGGATCAGAAGGGC
TGGCCTGAATCAGGAACTCCTCTCGCCAATTGTTGAGATTATCAAATGAT
TTCATGACATTCACATCATACACAAGAACACAACAGTCTGCGCCACGGTA
GAAAGCCACTCCAAGACTTTGAAACCTTTCCTGTCCAGCTGTATCCCATA
TCTGCAAAGTGAAAAGCCTGTCCTCAAATTGGACTTCTTTGGTCAAGAAA
TCTGCCCCAATGGTTGCTTTATACTGGTTACTAAACTTGCGGTTCACATA
TTGATTCATCAAAGAAGTCTTCCCAACCCCGCTGTCTCCGAGGATTATAA
CTTTGAGGAGCATGCGTCT
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