CX043477

Overview
NameCX043477
Unique NameCX043477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043477 vs. ExPASy Swiss-Prot
Match: LAC1_BOTFU (Laccase-1 OS=Botryotinia fuckeliana GN=lcc1 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 6.773e-17
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = -1
Query:  323 SHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFI 562
            +HP+HLHG+DF+ L+QG G Y A+      NLVNP RR+ + +P GG  VI F+ +NPG W MHCH   H   GLA  F+
Sbjct:  444 NHPIHLHGHDFWTLSQGTGAYTATTA---LNLVNPPRRDVMTLPTGGHLVIAFQIDNPGSWLMHCHIAWHASEGLALQFV 520          
BLAST of CX043477 vs. ExPASy Swiss-Prot
Match: FIO1_SCHPO (Iron transport multicopper oxidase fio1 OS=Schizosaccharomyces pombe GN=fio1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.179e-15
Identity = 46/135 (34.07%), Postives = 71/135 (52.59%), Query Frame = -1
Query:  323 FPNQPPVKF-DYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLV-NPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFI 721
            FP  P +   + TN +  N   + + P T +  + ++   V++++ N        HP HLHG+ F VL +G  N     D ++     NP RR+T+ +  G + VIRF A+NPG W +HCH + H+  GL  TFI
Sbjct:  366 FPKVPSIMIANSTNVDGYNLEPVTYGPYTNAY-IFEYGDVVDVIIDNHD---TGKHPFHLHGHTFQVLERGEENAGLYSDQESHTYYDNPMRRDTVEIEPGSFIVIRFIADNPGAWVIHCHIEWHMESGLLATFI 496          
BLAST of CX043477 vs. ExPASy Swiss-Prot
Match: LAC1_MELAO (Laccase-1 OS=Melanocarpus albomyces GN=LAC1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.196e-13
Identity = 37/88 (42.05%), Postives = 48/88 (54.55%), Query Frame = -1
Query:  323 HPMHLHGYDFYVLAQGFGNYNASR---------DSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFI 559
            HPMHLHG+DF VL +      AS+         D    N  NP RR+T  +P GGW ++ FR +NPG W  HCH   H+  GL+  F+
Sbjct:  481 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFL 568          
BLAST of CX043477 vs. ExPASy Swiss-Prot
Match: FET5_YEAST (Iron transport multicopper oxidase FET5 OS=Saccharomyces cerevisiae GN=FET5 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.561e-13
Identity = 44/121 (36.36%), Postives = 62/121 (51.24%), Query Frame = -1
Query:  323 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFG-----------------NYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFI 634
            + ++LK N  +E+VL N        HP HLHG++F ++ +  G                  YN S   + F    P  R+T+ +   G  V+RFRA+NPGVW+ HCH D HL  GLA+ FI
Sbjct:  396 NAQLLKHNDIIEVVLNN---YDSGRHPFHLHGHNFQIVQKSPGFHVDEAYDESEQDEMTVPYNESAPLQPFP-ERPMVRDTVVLEPSGHVVLRFRADNPGVWYFHCHVDWHLQQGLASVFI 512          
BLAST of CX043477 vs. ExPASy Swiss-Prot
Match: LAC1_NEUCR (Laccase OS=Neurospora crassa GN=lacc PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 2.039e-13
Identity = 55/180 (30.56%), Postives = 86/180 (47.78%), Query Frame = -1
Query:  323 LSASMNNHSFQAPTSLSI---LQAYFFNVGGVYEPNFPNQPPVKFDYT-NTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVE-SHPMHLHGYDFYVL---------AQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFI 820
            L  S+N +S    T  +I   L  + + V G       N+P +++  T NTN S   +++   +   V   K+      +++N    A    HP+HLHG+DF +L         +Q    ++ + D    N  NP RR+T  +P  GW +I FR +NPG W MHCH   H+  GL+  F+
Sbjct:  393 LQRSLNTNSIALNTGNTIPITLDGFVWRVNGTAININWNKPVLEYVLTGNTNYSQSDNIV---QVEGVNQWKY-----WLIENDPDGAFSLPHPIHLHGHDFLILGRSPDVTAISQTRYVFDPAVDMARLNGNNPTRRDTAMLPAKGWLLIAFRTDNPGSWLMHCHIAWHVSGGLSNQFL 564          
BLAST of CX043477 vs. ExPASy Swiss-Prot
Match: LAC5_TRAVE (Laccase-5 OS=Trametes versicolor GN=LCC5 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.322e-12
Identity = 49/122 (40.16%), Postives = 63/122 (51.64%), Query Frame = -1
Query:  326 SNDMSLLFPPKTTSVKMLKFNSTVEM----VLQNTALIAVES-HPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAV-IRFRANNPGVWFMHCHFDVHLPWGLATTF 673
            + D + L P    SV  L  NST+E+    +  + AL A  + HP HLHG+ F V+         S  S  FN  NP RR+T++    G  V IRF  +NPG WF+HCH D HL  G A  F
Sbjct:  384 AQDAASLLP--NGSVYTLPSNSTIEISFPIITTDGALNAPGAPHPFHLHGHTFSVVR--------SAGSSTFNYANPVRRDTVSTGNSGDNVTIRFTTDNPGPWFLHCHIDFHLDAGFAIVF 495          
BLAST of CX043477 vs. ExPASy Swiss-Prot
Match: LAC2_PODAN (Laccase-2 OS=Podospora anserina GN=LAC2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.322e-12
Identity = 37/122 (30.33%), Postives = 60/122 (49.18%), Query Frame = -1
Query:  323 FPPKTTSVKMLKFNSTVEMVLQN--TALIAVESHPMHLHGYDFYVLA----------QGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFI 652
            +PP+   + +   N     +++N  T   ++  HPMHLHG+DF V+           Q    +N + D       NP RR+   +P  GW +I F+++NPG W  HCH   H+  GL+  ++
Sbjct:  444 YPPQANVITVNSVNQWTYWLIENDPTGPFSIP-HPMHLHGHDFLVVGRSPDQPAGVPQTRYRFNPATDMALLKSSNPVRRDVAMLPANGWLLIAFKSDNPGAWLFHCHIAWHVSGGLSVQYL 564          
BLAST of CX043477 vs. ExPASy Swiss-Prot
Match: LAC4_TRAVI (Laccase-4 OS=Trametes villosa GN=LCC4 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.726e-12
Identity = 50/161 (31.06%), Postives = 74/161 (45.96%), Query Frame = -1
Query:  326 NVGGVYEPNFPNQPPVKFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVES-------------------HPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAV-PIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTF 748
            N+GGV   ++       FD TN  + ND+S + P     +++L   ++   +L + +L AV S                   HP HLHG+ F ++         +  S + N VNP RR+ +    +G    IRF  +NPG WF+HCH D HL  G A  F
Sbjct:  340 NIGGV---DYALNLDFNFDGTNFFI-NDVSFVSPTVPVLLQILSGTTSAADLLPSGSLFAVPSNSTIEISFPITATNAPGAPHPFHLHGHTFSIVR--------TAGSTDTNFVNPVRRDVVNTGTVGDNVTIRFTTDNPGPWFLHCHIDFHLEAGFAIVF 488          
BLAST of CX043477 vs. ExPASy Swiss-Prot
Match: LAC1_CRYPA (Laccase OS=Cryphonectria parasitica GN=LAC-1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.726e-12
Identity = 36/88 (40.91%), Postives = 48/88 (54.55%), Query Frame = -1
Query:  323 HPMHLHGYDFYVLAQGFGNYN---------ASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFI 559
            HP+HLHG+DF VL +   N +          S D  + N  NP RR+ + +P  GW +I F+  NPG W MHCH   H+  GL  TF+
Sbjct:  463 HPIHLHGHDFVVLGRS-PNVSPTAQTPYTFTSSDVSSLNGNNPIRRDVVMLPPKGWLLIAFQTTNPGAWLMHCHIAWHVSAGLGNTFL 549          
BLAST of CX043477 vs. ExPASy Swiss-Prot
Match: LAC1_PHLRA (Laccase OS=Phlebia radiata GN=LAC PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.945e-12
Identity = 42/104 (40.38%), Postives = 54/104 (51.92%), Query Frame = -1
Query:  326 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVP-IGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTF 634
            SV  L  N+T+E+ L   AL     HP HLHG+ F V+            S  +N VNP +R+ +++   G    IRF  NNPG WF+HCH D HL  G A  F
Sbjct:  395 SVYALPSNATIELSLPAGALGG--PHPFHLHGHTFSVVRPA--------GSTTYNYVNPVQRDVVSIGNTGDNVTIRFDTNNPGPWFLHCHIDWHLEAGFAVVF 488          
The following BLAST results are available for this feature:
BLAST of CX043477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
LAC1_BOTFU6.773e-1750.00Laccase-1 OS=Botryotinia fuckeliana GN=lcc1 PE=2 S... [more]
FIO1_SCHPO2.179e-1534.07Iron transport multicopper oxidase fio1 OS=Schizos... [more]
LAC1_MELAO1.196e-1342.05Laccase-1 OS=Melanocarpus albomyces GN=LAC1 PE=1 S... [more]
FET5_YEAST1.561e-1336.36Iron transport multicopper oxidase FET5 OS=Sacchar... [more]
LAC1_NEUCR2.039e-1330.56Laccase OS=Neurospora crassa GN=lacc PE=1 SV=3[more]
LAC5_TRAVE1.322e-1240.16Laccase-5 OS=Trametes versicolor GN=LCC5 PE=2 SV=1[more]
LAC2_PODAN1.322e-1230.33Laccase-2 OS=Podospora anserina GN=LAC2 PE=2 SV=1[more]
LAC4_TRAVI1.726e-1231.06Laccase-4 OS=Trametes villosa GN=LCC4 PE=3 SV=1[more]
LAC1_CRYPA1.726e-1240.91Laccase OS=Cryphonectria parasitica GN=LAC-1 PE=3 ... [more]
LAC1_PHLRA2.945e-1240.38Laccase OS=Phlebia radiata GN=LAC PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11C10_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11C10-E19-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043477 ID=CX043477; Name=CX043477; organism=Citrus sinensis; type=EST; length=883bp
TTTTTTTAAAGAGAAAAAAAAAAGATTAATTACTAATTTTACTGTTATTA
CAATGAAAAATGAACTTAATACATCGGTTACTGGTTACCACCATTATTAC
ATCAATAACAAATCTTTTTTGGAACTTTAACAAATGAATGGAACTGAAAC
ACTTGACAAATTACAAACAATTAATGAATGAAAGCTTTTTATTCAGAAAA
TAGCACAATTGTTTTTAATTTTATTTTTTGTGGAATTAATAATAATGGAT
GAACTTCTAGCACTGGGGAAGGTCAGCCGGTGGAGGAGGCAACATCGTCG
ACGGCGTCGGCCCATTTTCAACAATAAAAGTCGTGGCCAGACCCCACGGT
AAGTGAACGTCAAAGTGGCAGTGCATGAACCAAACACCTGGATTATTTGC
GCGGAATCTGATAACGGCCCATCCACCGATAGGAACAGCAATGGTGTTAC
GCCTCTGTGGGTTGACGAGATTGAAGTTTTTGCTGTCTCTGGAGGCGTTA
TAGTTTCCGAACCCTTGAGCCAATACGTAAAAGTCGTAGCCGTGAAGGTG
CATGGGATGACTCTCCACCGCGATCAACGCTGTGTTTTGCAGGACCATCT
CCACCGTCGAGTTGAACTTCAACATCTTGACGCTCGTTGTTTTTGGAGGA
AACAGCAGTGACATGTCGTTGCTGACGTTAGTGTTTGTGTAGTCAAATTT
GACGGGAGGCTGGTTTGGGAAATTGGGCTCGTAAACTCCACCCACGTTGA
AGAAATATGCTTGTAGAATTGACAAACTTGTGGGGGCCTGGAATGAATGA
TTGTTCATGCTGGCAGAGAGTCTTTGCGAGCCCGGACCTTGACATGTGGC
ATTTGCTGGGCATTGCTCAAGCCCCAATCCTAA
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