EG358218

Overview
NameEG358218
Unique NameEG358218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length415
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358218 vs. ExPASy Swiss-Prot
Match: PME1_ARATH (Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.252e-15
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEW-SGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNV 251
            S TV ++T + +++ P+GWM W SG     ++ Y EY NTGPGS    RVKW GY  + S ++ ++FTV   + G  W+PAT V
Sbjct:  498 STTVIMETVIGAVVRPSGWMSWVSGVDPPASIVYGEYKNTGPGSDVTQRVKWAGYKPVMSDAEAAKFTVATLLHGADWIPATGV 581          
BLAST of EG358218 vs. ExPASy Swiss-Prot
Match: PME51_ARATH (Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.553e-15
Identity = 38/77 (49.35%), Postives = 46/77 (59.74%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSW 233
            SRTV+I   L++LI P GW+ WSGDFAL TLYY E  NTGPGS  + RV W           V  ++V NFI  + W
Sbjct:  473 SRTVFIGCNLEALITPDGWLPWSGDFALKTLYYGESKNTGPGSDRSQRVSWSSQ---IPDEHVHVYSVANFIQADEW 546          
BLAST of EG358218 vs. ExPASy Swiss-Prot
Match: PME13_ARATH (Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.559e-15
Identity = 37/90 (41.11%), Postives = 59/90 (65.56%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSG-DFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRT+ +++ ++++I+P GW+ W   DFA++TLYYAEY N G    T +RVKW G+ V+ +  +   +TVG F+ G+ W+ A+  P   GL
Sbjct:  524 SRTIIMESKIENVIDPVGWLRWQETDFAIDTLYYAEYNNKGSSGDTTSRVKWPGFKVI-NKEEALNYTVGPFLQGD-WISASGSPVKLGL 611          
BLAST of EG358218 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.907e-14
Identity = 33/82 (40.24%), Postives = 55/82 (67.07%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDF--ALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAG-NSWLP 239
            S+TV +++ + S +NPAGW+ W+  +     T++Y EY N+GPGS  + RVKW GY  ++S  + ++FTV  F+ G ++W+P
Sbjct:  878 SKTVIMQSVIGSFVNPAGWIAWNSTYDPPPRTIFYREYKNSGPGSDLSKRVKWAGYKPISSDDEAARFTVKYFLRGDDNWIP 959          
BLAST of EG358218 vs. ExPASy Swiss-Prot
Match: PME_PETIN (Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 33/91 (36.26%), Postives = 55/91 (60.44%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWS-GDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGN-SWLPATNVPFTSGL 269
            SRT+ +++++D  I P GW  W+  +F  +T YYAEY N GPG++   R+ W+G+    +     +FT G +I  + +WL   NVP+ +G+
Sbjct:  281 SRTIIMQSYIDKFIEPEGWAPWNITNFGRDTSYYAEYQNRGPGAALDKRITWKGFQKGFTGEAAQKFTAGVYINNDENWLQKANVPYEAGM 371          
BLAST of EG358218 vs. ExPASy Swiss-Prot
Match: PME_BRANA (Probable pectinesterase/pectinesterase inhibitor OS=Brassica napus GN=BP19 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.192e-12
Identity = 35/87 (40.23%), Postives = 48/87 (55.17%), Query Frame = 3
Query:    9 TVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            T  I T +  LI P GW EW G+    T  Y E+ N GPG++TA RV W    +  S ++V +FTV N++   +W+   NVP   GL
Sbjct:  500 TAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANTAARVPWA--KMAKSAAEVERFTVANWLTPANWIQEANVPVQLGL 584          
BLAST of EG358218 vs. ExPASy Swiss-Prot
Match: PME5_ARATH (Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.781e-12
Identity = 34/89 (38.20%), Postives = 48/89 (53.93%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            S TV I + +  +I P GW  W G+    +  Y EY N GPG+ T  RV W    +  S ++V+ FTV N++   +W+   NVP T GL
Sbjct:  509 STTVIINSEIGDVIRPEGWKIWDGESFHKSCRYVEYNNRGPGAITNRRVNW--VKIARSAAEVNDFTVANWLGPINWIQEANVPVTLGL 595          
BLAST of EG358218 vs. ExPASy Swiss-Prot
Match: PME37_ARATH (Probable pectinesterase/pectinesterase inhibitor VGDH2 OS=Arabidopsis thaliana GN=VGDH2 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.157e-11
Identity = 34/87 (39.08%), Postives = 46/87 (52.87%), Query Frame = 3
Query:    9 TVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            TV I T +  LI P GW EW G+    T  Y E+ N GPG++T  R  W    V  S ++V  +TV N++   +W+   NVP   GL
Sbjct:  504 TVIIGTEIGDLIKPEGWTEWQGEQNHKTAKYIEFNNRGPGAATTQRPPW--VKVAKSAAEVETYTVANWVGPANWIQEANVPVQLGL 588          
BLAST of EG358218 vs. ExPASy Swiss-Prot
Match: PME4_ARATH (Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.366e-11
Identity = 34/89 (38.20%), Postives = 46/89 (51.69%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            S TV + T +  LI P GW  W G+    +  Y EY N GPG+    RV W    V  S ++V+ FT  N++   +W+   NVP T GL
Sbjct:  502 STTVIMSTEMGDLIRPEGWKIWDGESFHKSCRYVEYNNRGPGAFANRRVNWA--KVARSAAEVNGFTAANWLGPINWIQEANVPVTIGL 588          
The following BLAST results are available for this feature:
BLAST of EG358218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
PME1_ARATH2.252e-1542.86Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 P... [more]
PME51_ARATH6.553e-1549.35Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME13_ARATH8.559e-1541.11Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME26_ARATH1.907e-1440.24Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME_PETIN7.245e-1436.26Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=... [more]
PME_BRANA5.192e-1240.23Probable pectinesterase/pectinesterase inhibitor O... [more]
PME5_ARATH6.781e-1238.20Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 P... [more]
PME37_ARATH1.157e-1139.08Probable pectinesterase/pectinesterase inhibitor V... [more]
PME4_ARATH3.366e-1138.20Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 P... [more]

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Properties
Property NameValue
Genbank description12f11 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl012f11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358218 ID=EG358218; Name=EG358218; organism=Citrus sinensis; type=EST; length=415bp
ACTCGCGAACCGTTTATATCAAGACCTTCCTTGACAGCTTGATAAACCCC
GCTGGATGGATGGAATGGAGTGGTGATTTTGCTTTGAATACTCTGTATTA
TGCCGAGTATATGAACACTGGCCCGGGTTCTTCAACTGCTAACAGAGTCA
AGTGGCGTGGCTATCACGTTCTTACCAGTCCGTCCCAGGTTAGCCAGTTC
ACCGTAGGCAACTTTATTGCTGGAAATTCTTGGTTGCCGGCCACCAACGT
CCCCTTCACTTCCGGTCTCTAGGTTGATCATTCTTTGTTTATATTTTATT
GCACATGAAATTAATACCAACTTGTTGAGGTAATTAGGAGGAAAAATAAT
AATAATAAGGTAGTTAAAAGGAACTACCATCTTGGCATTGTCAGTTGTTA
TTCTTTGTGAAGTTG
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