CX043432

Overview
NameCX043432
Unique NameCX043432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043432 vs. ExPASy Swiss-Prot
Match: FADA_ALCBS (3-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=fadA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.280e-20
Identity = 76/212 (35.85%), Postives = 105/212 (49.53%), Query Frame = 2
Query:  110 SIKPRDVCIVGVARTPMGGFL-GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGM-LKDGLWDVYNDCS--MGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVE 727
            S+ P+DV IV   RTPMG    G    + A KL +  I+A + R  N D  L ++V +G V  +   G   AR  ++ AG+P +    TVN++C S ++A+  ASQSI  G  DV V GG+E M                GH ++  G+ L   +  V    S  MG  AE+  + H ITRE QD F V S +    A   G +  EIVP+E
Sbjct:    2 SLNPKDVVIVDAVRTPMGKSRNGQFRHVRAEKLSAQLIQALMARNPNWDIQLTEDVIWGCVNQTKEQGMNIARNISMLAGLPRTSAAQTVNRLCGSSMQALHSASQSIMTGNGDVFVIGGVEHM----------------GHVAMDHGIDLNPEMSKVTAKASNMMGLTAEMLGKMHGITREQQDAFGVRSHKLAWEATQQGRWDNEIVPIE 197          
BLAST of CX043432 vs. ExPASy Swiss-Prot
Match: FADA_ALISL (3-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida (strain LFI1238) GN=fadA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.007e-20
Identity = 72/221 (32.58%), Postives = 110/221 (49.77%), Query Frame = 2
Query:  122 RDVCIVGVARTPMGGFL-GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDE 775
            ++V IV   RTPMG    G      A  L +  ++  L+R  NVDP+ ++++++G V      G   AR A+L AG+P S+  TTVN++C S ++A+  AS++I +G  D+ + GG+E M + P             + +   GM             MG  AE+  + H I+RE QD FA  S ++   A   G F  EI+P+E     G   T+V  DE
Sbjct:    2 KNVVIVDCIRTPMGRSKNGVFRHTRAEDLSAHLMKGLLERNPNVDPNQIEDIYWGCVQQTLEQGFNIARNASLLAGLPKSIAATTVNRLCGSSMQALHDASRAIMVGDADICIIGGVEHMGHVPMNHGVDFHSGLSKNVAKASGM-------------MGLTAEMLGKMHGISREQQDAFAFASHQKAHRATIEGHFDSEILPMEGHDENG-ALTLVKHDE 208          
BLAST of CX043432 vs. ExPASy Swiss-Prot
Match: THIK_HUMAN (3-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapiens GN=ACAA1 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.536e-19
Identity = 83/249 (33.33%), Postives = 119/249 (47.79%), Query Frame = 2
Query:   62 ADRDWH*QMAPA-AASDSIKPRDVCIV-----GVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDC--SMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPV--EVSAGRG-KPSTIVDKDE 775
            AD  W  Q AP  + +      DV +V      + R   GGF  T    +  +L S  + A LK  N+ P  + ++  GNVL    G   AR A   + IP +V  +TVN+ C+SGL+A+   +  I+ G  D+ +A G+ESMS A +           G+   +   L +   +   DC   MG  +E  AE+  I+RE QD FA+ S ++   AQ  G F  EIVPV   V   +G K S  V +DE
Sbjct:   15 ADSGWMPQAAPCLSGAPQASAADVVVVHGRRTAICRAGRGGFKDT----TPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADR-----------GNPGNITSRLMEK--EKARDCLIPMGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDE 246          
BLAST of CX043432 vs. ExPASy Swiss-Prot
Match: FADA_SHELP (3-ketoacyl-CoA thiolase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.536e-19
Identity = 72/206 (34.95%), Postives = 103/206 (50.00%), Query Frame = 2
Query:  122 RDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLK-DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVE 727
            +   IV   RTPMG    G   ++ A  L +  ++A L R   +DP+ +++V +G V      G   AR AAL AGIP      TVN++C S ++AI  A+++I  G+ D  + GG+E M + P        G    H  L   + K  G+        MG  AE+  + H ITR+ QD+FAV S +R  AA   G FA EI  +E
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNMRAESLSAELMKALLVRNPQLDPNTIEDVIWGCVQQTLEQGFNIARNAALLAGIPKQAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIVGGVEHMGHVP-----MNHGVDF-HPGLATNVAKASGM--------MGLTAEMLGKMHGITRQQQDEFAVRSHQRAHAATVEGRFANEIHAIE 193          
BLAST of CX043432 vs. ExPASy Swiss-Prot
Match: FADA_PSEFR (3-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fadA PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.536e-19
Identity = 72/212 (33.96%), Postives = 106/212 (50.00%), Query Frame = 2
Query:  110 SIKPRDVCIVGVARTPMGGFLGTLS-SLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVE 727
            S+ PRDV IV   RTPMG   G +  +  A  + +  I   L+R + VDP  V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+I  G  DV V GG+E M                GH S++ G+  +    L+       MG  AE+  + H I+RE QD FAV S +    A   G F  EI+P++
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM----------------GHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPMQ 197          
BLAST of CX043432 vs. ExPASy Swiss-Prot
Match: FADA_PSEF5 (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=fadA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.536e-19
Identity = 73/212 (34.43%), Postives = 106/212 (50.00%), Query Frame = 2
Query:  110 SIKPRDVCIVGVARTPMGGFLGTLS-SLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVE 727
            S+ PRDV IV   RTPMG   G +  +  A  + +  I   L+R A VDP+ V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+I  G  DV V GG+E M                GH S++ G+  +    L+       MG  AE+  + H ITRE QD F V S +    A   G F  EI+P++
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNAKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAGQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM----------------GHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGITREQQDAFGVRSHQLAHKATVEGKFKDEIIPMQ 197          
BLAST of CX043432 vs. ExPASy Swiss-Prot
Match: FADA_CHRSD (3-ketoacyl-CoA thiolase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=fadA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.536e-19
Identity = 75/226 (33.19%), Postives = 112/226 (49.56%), Query Frame = 2
Query:  110 SIKPRDVCIVGVARTPMGGFL-GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSANLGQAP--ARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDE 775
            S+ PRD+ +V   RT M     G   ++ A  L +  ++A   R AN+ P+ V +V +G V +  L Q+   AR AA+  GIP +V   TVN++C S + A+ +A+ +I+ G+ D  + GG+E M + P           + H   VD       +       MG  AEL  + H + RE QD F V S +R  AA + G F  EIV VE     G    ++D+DE
Sbjct:    2 SLNPRDIVVVDAVRTAMAKAKHGAFRNVRAENLSAAVMQALFDRNANLVPAEVDDVIWGCV-NQTLEQSMNIARNAAIMTGIPRTVPAQTVNRLCGSSMSALHIATANIKAGMGDFYIIGGVEHMEHVP-----------MTHG--VDVNPAASKYAAKAAMMMGLTAELLGKMHGVGREEQDAFGVRSHQRAQAANENGYFDNEIVGVEGHDADGF-LRLIDRDE 212          
BLAST of CX043432 vs. ExPASy Swiss-Prot
Match: THIKA_RAT (3-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus norvegicus GN=Acaa1a PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.006e-19
Identity = 78/238 (32.77%), Postives = 116/238 (48.74%), Query Frame = 2
Query:   83 QMAPAAAS-DSIKPRDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDC--SMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSA--GRGKPSTI-VDKDE 775
            Q AP +A+       DV +V   RTP+G    G     +  +L S  + A L+   + P  + ++  GNVL    G   AR A   +GIP +V  + VN+ C+SGL+A+   +  I+ G  D+ +A G+ESMS            S  G+   +   L +   D   DC   MG  +E  AE+  I+R+ QD FA+ S ++  +AQ  G F  EIVPV  +    +G   TI V +DE
Sbjct:   22 QAAPCSATFPQASASDVVVVHGRRTPIGRAGRGGFKDTTPDELLSAVLTAVLQDVKLKPECLGDISVGNVLEPGAGAVMARIAQFLSGIPETVPLSAVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMSL-----------SNRGNPGNISSRLLES--DKARDCLIPMGITSENVAERFGISRQKQDAFALASQQKAASAQSKGCFRAEIVPVTTTVLDDKGDRKTITVSQDE 246          
BLAST of CX043432 vs. ExPASy Swiss-Prot
Match: THIKB_RAT (3-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus norvegicus GN=Acaa1b PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.621e-19
Identity = 77/236 (32.63%), Postives = 116/236 (49.15%), Query Frame = 2
Query:   83 QMAPAAAS-DSIKPRDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSA--GRGKPSTI-VDKDE 775
            Q AP +A        DV +V   RTP+G    G     +  +L S  + A L+   + P  + ++  GNVL    G A AR A   +GIP +V  + VN+ C+SGL+A+   +  I+ G  D+ +A G+ESM+     L+E      +    L +   +D L        MG  +E  AE+  I+R+ QD FA+ S ++  +AQ  G F  EIVPV  +    +G   TI V +DE
Sbjct:   22 QAAPCSAGFPQASASDVVVVHGRRTPIGRAGRGGFKDTTPDELLSAVLTAVLQDVKLKPECLGDISVGNVLQPGAGAAMARIAQFLSGIPETVPLSAVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMT-----LSERGNPGNISSRLLENEKARDCL------IPMGITSENVAERFGISRQKQDAFALASQQKAASAQSKGCFRAEIVPVTTTVLDDKGDRKTITVSQDE 246          
BLAST of CX043432 vs. ExPASy Swiss-Prot
Match: THIKB_MOUSE (3-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musculus GN=Acaa1b PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.621e-19
Identity = 76/238 (31.93%), Postives = 118/238 (49.58%), Query Frame = 2
Query:   83 QMAPAAASD-SIKPRDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDC--SMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSA--GRGKPSTI-VDKDE 775
            Q AP +A        DV +V   RTP+G    G     +  +L S  + A L+   + P  + ++  GNVL    G   AR A   +GIP +V  +TVN+ C+SGL+A+   +  I+ G  D+ +A G+ESM+             R  H ++   +L++   +   DC   MG  +E  AE+  ++R+ QD FA+ S ++  +AQ  G F  EIVPV  +    +G   TI V +DE
Sbjct:   22 QAAPCSAGFLQASASDVVVVHGRRTPIGRASRGCFKDTTPDELLSAVLTAVLQDVKLKPEQLGDISVGNVLQPGAGAIMARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMT----------LSQRGNHGNISSRLLEN---EKARDCLIPMGITSENVAERFGVSRQKQDAFALASQQKAASAQSRGCFHAEIVPVTTTVLNDKGDKKTITVSQDE 246          
The following BLAST results are available for this feature:
BLAST of CX043432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
FADA_ALCBS5.280e-2035.853-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis... [more]
FADA_ALISL9.007e-2032.583-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida ... [more]
THIK_HUMAN1.536e-1933.333-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapie... [more]
FADA_SHELP1.536e-1934.953-ketoacyl-CoA thiolase OS=Shewanella loihica (str... [more]
FADA_PSEFR1.536e-1933.963-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fa... [more]
FADA_PSEF51.536e-1934.433-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
FADA_CHRSD1.536e-1933.193-ketoacyl-CoA thiolase OS=Chromohalobacter salexi... [more]
THIKA_RAT2.006e-1932.773-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus n... [more]
THIKB_RAT2.621e-1932.633-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus n... [more]
THIKB_MOUSE2.621e-1931.933-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_11A08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11A08-A15-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043432 ID=CX043432; Name=CX043432; organism=Citrus sinensis; type=EST; length=775bp
CTGCGCTTCCACCCGCAAAAACCATCTCCTCCTCACGTGATCCACACTCA
CTCTGAATCTCGCAGATCGTGATTGGCATTGACAAATGGCTCCAGCGGCA
GCATCTGATTCGATAAAGCCTAGAGATGTTTGTATTGTCGGGGTTGCTCG
TACACCAATGGGTGGATTTCTTGGTACTCTATCTTCCTTATCTGCTACCA
AGCTTGGATCTATCGCTATTGAAGCTGCTCTTAAGAGAGCAAATGTTGAT
CCATCACTTGTACAAGAAGTTTTCTTTGGTAATGTTCTCAGTGCAAATCT
AGGACAGGCTCCTGCTAGACAGGCTGCATTGGGTGCAGGAATTCCGAATT
CAGTGGTCTGTACTACTGTTAACAAAGTTTGTGCATCAGGGCTGAAAGCT
ATAATGCTTGCATCACAGAGTATCCAGTTGGGGATCAATGATGTCATTGT
GGCTGGAGGAATGGAAAGCATGTCTAACGCACCTAAATATTTGGCAGAAG
CGAGAAAGGGGTCTCGACTTGGACATGATTCTCTGGTTGATGGAATGCTT
AAAGATGGATTATGGGATGTTTATAATGATTGTAGCATGGGAACTTGTGC
TGAACTTTGTGCTGAACAACATTCAATAACAAGGGAGAATCAGGATGACT
TTGCTGTTCTGAGCTTTGAGCGTGGTATTGCTGCCCAAGATGCTGGTGCC
TTTGCATGGGAAATTGTTCCAGTTGAAGTTTCTGCGGGAAGGGGAAAACC
ATCAACCATTGTTGATAAGGATGAA
back to top