CX043386

Overview
NameCX043386
Unique NameCX043386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043386 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.500e-59
Identity = 106/205 (51.71%), Postives = 134/205 (65.37%), Query Frame = -2
Query:  214 KLFQALVTLEMKPCVKEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 825
            K F A  T        +++  F AQT HETTGGW  AP G Y+WGYCY R+                 PG+ Y+GRGPIQ+++N NY   G A+GV+LLNNPDL+A D V+SFK+A+WFWMTAQ PKPS H+VI   W PS  D   GR+PG+G+ TNIINGG+EC    N  + NRIGF+  +C   G+ PG+NLDC+NQRP+G
Sbjct:   42 KTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPFG 246          
BLAST of CX043386 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.281e-57
Identity = 88/191 (46.07%), Postives = 113/191 (59.16%), Query Frame = -2
Query:  217 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLP--GQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 780
            K +L  FFAQT  ET+G         + WGYC + +++P +SD          P    YYGRGP+QL WN NY  CG  LG +LL+ P+ +ATDPVLSF++A+WFWM       PSCHEVI  EW PS  D+ AGR PG+G+ TNII  G EC   G    +NRI ++  +C    + PGDNL C NQ  +
Sbjct:  115 KRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNP-NSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETF 304          

HSP 2 Score: 62.003 bits (149), Expect = 1.281e-57
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = -1
Query:  758 RNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 889
            RN+  CP +GFYTYDA+  A + +PGFG +G++  RKRE+AAFF
Sbjct:   79 RNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFF 122          
BLAST of CX043386 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.976e-55
Identity = 89/199 (44.72%), Postives = 126/199 (63.32%), Query Frame = -2
Query:  193 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPL-PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQS 780
            K ++  F AQT H T+GG        Y+WGYCY ++V  A+SD        P  PG+ Y+ RGP+Q+ +N NY   GEA+G DLL NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C   G +   +R+ F+  +C   G+  G NLDC  Q P+  ++M+ S
Sbjct:  149 KREVAAFLAQTSHATSGG-------PYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQC--AGGNGGADRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          

HSP 2 Score: 61.2326 bits (147), Expect = 1.976e-55
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = -1
Query:  761 YRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAF 892
            +R+DA CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF
Sbjct:  112 HRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAF 155          
BLAST of CX043386 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.576e-55
Identity = 89/199 (44.72%), Postives = 125/199 (62.81%), Query Frame = -2
Query:  193 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPL-PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQS 780
            K ++  F AQT H T+GG        Y+WGYCY ++V  A+SD        P  PG+ Y+ RGP+Q+ +N NY   GEA+G DLL NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C   G +   +R+ F+  +C   G+  G NLDC  Q P+   +M+ S
Sbjct:  149 KREVAAFLAQTSHATSGG-------PYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQC--AGGNGGADRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          

HSP 2 Score: 61.2326 bits (147), Expect = 2.576e-55
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = -1
Query:  761 YRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAF 892
            +R+DA CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF
Sbjct:  112 HRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAF 155          
BLAST of CX043386 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.577e-45
Identity = 93/203 (45.81%), Postives = 119/203 (58.62%), Query Frame = -2
Query:  217 KLFQALVTLEMKPCVKEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 825
            K F A  T       K ++  F AQT HETTGGW  AP G Y  G         ++SD             Y+GRGPIQ+++N NY   G+A+GVDLL NPDL+ +D  + FK+A+WFWMT Q PKPS H+VI   W PS+ D  AGR+PGYG+ TNII+GG+ECG      V +RIG++            DNLDC NQ+P+
Sbjct:   30 KSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELG---------STSD-------------YFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYK-----------DNLDCYNQKPF 199          
BLAST of CX043386 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.017e-33
Identity = 68/187 (36.36%), Postives = 90/187 (48.13%), Query Frame = -2
Query:  235 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQ----VSPASSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 780
            K ++  FFA   HETT               C+I +    V  A  D           G+ YYGRGP+QL+WN NY   G+A+G D L NP+ +ATD   SFK+A+WFWMT                     +V++    G+G TT  ING +EC     D   +RI F+  +C  FG+ PGDNL C
Sbjct:  136 KREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT---------------------NVHSVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          

HSP 2 Score: 44.2838 bits (103), Expect = 4.017e-33
Identity = 22/41 (53.66%), Postives = 25/41 (60.98%), Query Frame = -1
Query:  758 ARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 880
            A CP + FYT  AF+ A    P FGN G+    KREIAAFF
Sbjct:  105 ASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFF 143          
BLAST of CX043386 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.237e-33
Identity = 59/185 (31.89%), Postives = 87/185 (47.03%), Query Frame = -2
Query:  235 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS---DXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 780
            K ++  FFA   HET               +CYI ++   S    D             YYGRGP+Q++WN NY   G+++G D L +PD +A  PVL+F++A+W+W        + H+  +                G+G T   ING +EC      AV NR+ ++  FC +FG+ PG NL C
Sbjct:  119 KREIAAFFAHANHETIK-------------FCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTN------NVHDAFVSG-------------QGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          

HSP 2 Score: 51.9878 bits (123), Expect = 5.237e-33
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = -1
Query:  758 DARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 883
            D  C A+GFYT DAF+ AA  +P FG +G+    KREIAAFF
Sbjct:   85 DDGCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFF 126          
BLAST of CX043386 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.159e-32
Identity = 60/182 (32.97%), Postives = 93/182 (51.10%), Query Frame = -2
Query:  235 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 780
            K ++  +FA   HET           +A  YC   Q  P + +            +Y+GRGP+QL+WN NY+  G+ L  D LN+PD++  DP++SFK+++WFW+     +     VI+D   P+          G+G T  IINGG EC       +  R+G++  +C + G+ PG+NL C
Sbjct:   97 KREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYPCNPNK-----------EYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI-----RKGVQYVILD---PN---------QGFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          

HSP 2 Score: 51.2174 bits (121), Expect = 1.159e-32
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = -1
Query:  758 ARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 880
            A CP + FYT   F+EA  A+PGFG    +  RKREIAA+F
Sbjct:   64 ANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYF 104          
BLAST of CX043386 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.072e-31
Identity = 65/185 (35.14%), Postives = 91/185 (49.19%), Query Frame = -2
Query:  235 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXP--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 780
            K ++  FFA   HET                CYI +++ AS D            PG+ YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM                     N+V+   L G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  138 KREIAAFFAHVTHETGH-------------MCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          

HSP 2 Score: 39.2762 bits (90), Expect = 6.072e-31
Identity = 17/39 (43.59%), Postives = 22/39 (56.41%), Query Frame = -1
Query:  758 CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 874
            C  + FYT  +F+ AA ++ GF         KREIAAFF
Sbjct:  107 CAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFF 145          
BLAST of CX043386 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.341e-30
Identity = 63/185 (34.05%), Postives = 90/185 (48.65%), Query Frame = -2
Query:  235 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXP--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 780
            K ++  FFA   HET                CYI +++ A+ D            PG+ YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM                     N+V+     G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  135 KREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          

HSP 2 Score: 41.9726 bits (97), Expect = 1.341e-30
Identity = 18/39 (46.15%), Postives = 24/39 (61.54%), Query Frame = -1
Query:  758 CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 874
            C  + FYT  +F+ AA+++ GF N       KREIAAFF
Sbjct:  104 CAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFF 142          
The following BLAST results are available for this feature:
BLAST of CX043386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHID_SOLLC2.500e-5951.71Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI8_POPTR1.281e-5746.07Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI7_ORYSJ1.976e-5544.72Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI2.576e-5544.72Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIT_AVESA4.577e-4545.81Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHIP_BETVU4.017e-3336.36Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI6_ORYSJ5.237e-3331.89Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_DIOJA1.159e-3232.97Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI5_ORYSJ6.072e-3135.14Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ1.341e-3034.05Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_10G02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10G02-N4-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043386 ID=CX043386; Name=CX043386; organism=Citrus sinensis; type=EST; length=892bp
TTGGGGTACCGGGCCCCCTTGATGGAGAAGACTCATTGATCCATGTTGGA
TCAGTCTTATTTAATTTACTTACAATAAGAGCGTAACAAACTAACAATTT
AGTTGTCCACCTACAAGTGTGACATCTAAAGTTTTTATTAAGTAGCTTTT
ATTAAGCTTATTTTACTAAAACGTTGATCATGATGATCACATAGATTGTG
CCATCAGATTAAGGCCATAAGGCCGTTGGTTGGAGCAATCAAGATTGTCA
CCAGGCTGAATCCCAAACTTGCCACAGAAAGTGGTAAAGAACCCAATACG
GTTACGTACAGCGTCATTCCCAACGTAGCCACATTCAATTCCACCGTTGA
TTATATTTGTGGTTAGACCGTATCCCGGAAGCCGGCCGGCGTTTACGTCA
TTTGCTGATGGTTTCCATTCGTCGATAATGACTTCGTGGCACGATGGCTT
TGGTGGCTGTGCAGTCATCCAGAACCAGATTGCTGACTTGAATGATAGTA
CTGGATCAGTGGCAAGTAGGTCTGGATTGTTCAACAAGTCCACCCCCAAG
GCTTCTCCGCACCTTAAGTAATTGCAATTCCAAGTGAGTTGAATTGGACC
TCGGCCATAGTATTGCCCTGGCAAGGGACATGGACAGTAAGGATAACAGT
AGTCGGACGACGCAGGGCTAACTTGCCTAATATAGCAATATCCCCAAGCA
TATTCTCCACCAGGTGCATCGGTCCATCCCCCAGTAGTTTCATGGCCAGT
TTGGGCAAAAAAAGGCAGCAATTTCTCTTTTACGCATGGTTTCATTTCCA
GAGTTACCAAAGCCTGGAAAAGCTTGGGCTGCCTCTATAAAAGCATCATA
AGTGTAGAAGCCTCTGGCAGGGCATCGGGCATCATTTCTATA
back to top