CX043386

Overview
NameCX043386
Unique NameCX043386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043386 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.449e-29
Identity = 57/184 (30.98%), Postives = 88/184 (47.83%), Query Frame = -2
Query:  235 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 780
            K ++  FFA   HET               +CYI +++ +++  D            +YYGRGP+Q++WN NY   G A+G D L +P  +A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG      +  R+G++  +C + G+ PG NL C
Sbjct:  120 KREIAAFFAHATHETGH-------------FCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          

HSP 2 Score: 47.7506 bits (112), Expect = 2.449e-29
Identity = 19/39 (48.72%), Postives = 26/39 (66.67%), Query Frame = -1
Query:  758 CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 874
            C  + FYT  AF+ A + +PGF + G++   KREIAAFF
Sbjct:   89 CEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFF 127          
BLAST of CX043386 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.022e-28
Identity = 54/155 (34.84%), Postives = 88/155 (56.77%), Query Frame = -2
Query:  235 YCYIRQVSPASSDXXXXXXXXP--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 690
            +CYI +++ AS D            PG+ Y+GRGPIQL+WN NY  CG++L ++LL  P+L++++P ++F++ +WFWM +  P       ++++              G+G T   IN G+EC    + AV  RI ++  +CG+ G+ PG NL C
Sbjct:  136 FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAIN-GMECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          

HSP 2 Score: 39.6614 bits (91), Expect = 2.022e-28
Identity = 19/39 (48.72%), Postives = 23/39 (58.97%), Query Frame = -1
Query:  758 CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 874
            C  + FYT D+FI AA  FP F NS    + +REIA  F
Sbjct:   92 CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMF 126          
BLAST of CX043386 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.425e-28
Identity = 54/184 (29.35%), Postives = 87/184 (47.28%), Query Frame = -2
Query:  235 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 780
            K ++  FFA   HET               +CYI +++ +++  D            +YYGRGP+Q++WN NY   G  +G + L +P+ +A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC       +  R+G++  +C +  + PG NL C
Sbjct:  131 KREIAAFFAHVTHETGH-------------FCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          

HSP 2 Score: 48.9062 bits (115), Expect = 3.425e-28
Identity = 21/39 (53.85%), Postives = 25/39 (64.10%), Query Frame = -1
Query:  758 CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 874
            C  + FYT  AF+ A  A+PGF + G E   KREIAAFF
Sbjct:  100 CEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFF 138          
BLAST of CX043386 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.172e-27
Identity = 53/156 (33.97%), Postives = 77/156 (49.36%), Query Frame = -2
Query:  235 YCYIRQVSPASSDXXXXXXXXPLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 690
            +CYI ++  AS D          P      Y+GRGPIQL+WN NY   G A   D L  P+ ++ D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ ++T +C + G+  GDNL C
Sbjct:  136 FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          

HSP 2 Score: 43.8986 bits (102), Expect = 2.172e-27
Identity = 20/42 (47.62%), Postives = 26/42 (61.90%), Query Frame = -1
Query:  758 DARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 883
            D+ C  + FYT DAF+ A  ++  FG  G+E   KREIAA F
Sbjct:   85 DSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAF 126          
BLAST of CX043386 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 2.136e-26
Identity = 72/197 (36.55%), Postives = 105/197 (53.30%), Query Frame = -2
Query:  241 FQALVTLEMKPCVKEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQYYG-RGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGND--AVR-NRIGFFTTFCGKFGIQPGDNL 819
            F A  T+      K ++  F A     T+G  +D     +AWG C+I   +   +D           G+ Y  RGPIQLT N NY   G+A+G DL+ NPDL+  DP++SFK+A+WFWM+    KPSCH++++     +AN   A R+P  G+  NII+        G+D  AVR + IGF+  +C   G+  G +L
Sbjct:  167 FPAFGTIGDVATRKREVAAFLAHISQATSGERSDVEN-PHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISRAF-----GHDDFAVRSSSIGFYKRYCDMLGVSYGHDL 351          
BLAST of CX043386 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.535e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = -2
Query:  331 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 468
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of CX043386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIB_MAIZE2.449e-2930.98Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_BRANA2.022e-2834.84Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIA_MAIZE3.425e-2829.35Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU2.172e-2733.97Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
AGI_URTDI2.136e-2636.55Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI4_ARAHY2.535e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10G02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10G02-N4-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043386 ID=CX043386; Name=CX043386; organism=Citrus sinensis; type=EST; length=892bp
TTGGGGTACCGGGCCCCCTTGATGGAGAAGACTCATTGATCCATGTTGGA
TCAGTCTTATTTAATTTACTTACAATAAGAGCGTAACAAACTAACAATTT
AGTTGTCCACCTACAAGTGTGACATCTAAAGTTTTTATTAAGTAGCTTTT
ATTAAGCTTATTTTACTAAAACGTTGATCATGATGATCACATAGATTGTG
CCATCAGATTAAGGCCATAAGGCCGTTGGTTGGAGCAATCAAGATTGTCA
CCAGGCTGAATCCCAAACTTGCCACAGAAAGTGGTAAAGAACCCAATACG
GTTACGTACAGCGTCATTCCCAACGTAGCCACATTCAATTCCACCGTTGA
TTATATTTGTGGTTAGACCGTATCCCGGAAGCCGGCCGGCGTTTACGTCA
TTTGCTGATGGTTTCCATTCGTCGATAATGACTTCGTGGCACGATGGCTT
TGGTGGCTGTGCAGTCATCCAGAACCAGATTGCTGACTTGAATGATAGTA
CTGGATCAGTGGCAAGTAGGTCTGGATTGTTCAACAAGTCCACCCCCAAG
GCTTCTCCGCACCTTAAGTAATTGCAATTCCAAGTGAGTTGAATTGGACC
TCGGCCATAGTATTGCCCTGGCAAGGGACATGGACAGTAAGGATAACAGT
AGTCGGACGACGCAGGGCTAACTTGCCTAATATAGCAATATCCCCAAGCA
TATTCTCCACCAGGTGCATCGGTCCATCCCCCAGTAGTTTCATGGCCAGT
TTGGGCAAAAAAAGGCAGCAATTTCTCTTTTACGCATGGTTTCATTTCCA
GAGTTACCAAAGCCTGGAAAAGCTTGGGCTGCCTCTATAAAAGCATCATA
AGTGTAGAAGCCTCTGGCAGGGCATCGGGCATCATTTCTATA
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