CX043363

Overview
NameCX043363
Unique NameCX043363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043363 vs. ExPASy Swiss-Prot
Match: VRAB_STAAC (Putative acetyl-CoA C-acetyltransferase vraB OS=Staphylococcus aureus (strain COL) GN=vraB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.455e-23
Identity = 66/180 (36.67%), Postives = 101/180 (56.11%), Query Frame = -3
Query:  239 SVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 778
            + D+ ++ +    +  + KP  K  GT TA N+   +DGA  +L+M++ +A + G     +F+    VGVD +  GIGP  AI   +K   L I++I + EINEAF++Q V C + L +   ++N+ GGA+A GHP GA+GA+ V  L         D    + SM IG G+G AA+F R
Sbjct:  205 NTDESLKSHIPKDNFGRFKPVIK-GGTVTAANSCMKNDGAVLLLIMEKDMAYELGFEHGLLFKDGVTVGVDSNFPGIGPVPAISNLLKRNQLTIENIEVIEINEAFSAQVVACQQALNISNTQLNIWGGALASGHPYGASGAQLVTRLFYMF-----DKETMIASMGIGGGLGNAALFTR 378          
BLAST of CX043363 vs. ExPASy Swiss-Prot
Match: VRAB_STAA1 (Putative acetyl-CoA C-acetyltransferase vraB OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=vraB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.455e-23
Identity = 66/180 (36.67%), Postives = 101/180 (56.11%), Query Frame = -3
Query:  239 SVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 778
            + D+ ++ +    +  + KP  K  GT TA N+   +DGA  +L+M++ +A + G     +F+    VGVD +  GIGP  AI   +K   L I++I + EINEAF++Q V C + L +   ++N+ GGA+A GHP GA+GA+ V  L         D    + SM IG G+G AA+F R
Sbjct:  205 NTDESLKSHIPKDNFGRFKPVIK-GGTVTAANSCMKNDGAVLLLIMEKDMAYELGFEHGLLFKDGVTVGVDSNFPGIGPVPAISNLLKRNQLTIENIEVIEINEAFSAQVVACQQALNISNTQLNIWGGALASGHPYGASGAQLVTRLFYMF-----DKETMIASMGIGGGLGNAALFTR 378          
BLAST of CX043363 vs. ExPASy Swiss-Prot
Match: YKA3_CAEEL (Uncharacterized protein B0303.3 OS=Caenorhabditis elegans GN=B0303.3 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.434e-23
Identity = 73/204 (35.78%), Postives = 107/204 (52.45%), Query Frame = -3
Query:  242 EKRVTISVDDGIRPNTTIADLAKLKPAF-KKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDP-SVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYV----------YCIK------KLGLDP-EKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 796
            +K  TI  D+GIR +T +  L+ LKPAF K  GT TA NAS ++DGA A L+M    A+  G       R +  V  DP   + + PA  IP  +  AGL + D+++FEI+EAFA Q +          +C +      K G  P +K+N+ GG++++GHP GATG R        +K   +  ++ VI+ C   G G   + E
Sbjct:  244 KKPKTIKEDNGIRVST-LEKLSSLKPAFVKPHGTVTAANASYLTDGASAALIMTEEYALANGYKPKAYLRDYLYVAQDPKDQLLLSPAYVIPKLLDKAGLTLKDVDVFEIHEAFAGQVLANLNAMDSDYFCKEQMKRSGKFGRVPMDKLNLWGGSLSIGHPFGATGVRLATHSAHRLKE--EKGQYAVIAACAAGGHGVGMLIE 444          
The following BLAST results are available for this feature:
BLAST of CX043363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
VRAB_STAAC1.455e-2336.67Putative acetyl-CoA C-acetyltransferase vraB OS=St... [more]
VRAB_STAA11.455e-2336.67Putative acetyl-CoA C-acetyltransferase vraB OS=St... [more]
YKA3_CAEEL9.434e-2335.78Uncharacterized protein B0303.3 OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10E12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10E12-J24-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043363 ID=CX043363; Name=CX043363; organism=Citrus sinensis; type=EST; length=813bp
CCAAAATTGCACACCATTGGATCTGAAAACAGATTGTTTGATAGTTAGCA
ATGGCTTTATTATGTTTCAACTAATACCCATAGTACCCATCATCAACTAA
TTTTGAAATTCAACCAATCCATGCTTACATAAAACAGTGAGATGCAATTG
CAAACAAATGCATCTACTTGGCATCCTTTGACAAGTGGGTGTGAGTTGGA
ACCATTCGAGCATTGCATAGTTCGTCAACACAATCTCCTCTCTCGAAAAC
TGCTGCAGCCCCCATGCCTGAGCCTATGCACATGGAGATCACTCCAAATC
GACAATCTTTGCCACGACGCTTCATCTCACTCAATAGAGTTGCAACACAG
CGTGCACCTGTCGCACCCAGAGGATGCCCAAGAGCCACTGCACCTCCATT
AACATTGACTTTTTCAGGATCAAGCCCCAGTTTCTTAATACAATAAACAT
ACTGGGATGCAAATGCCTCATTTATCTCAAACAAATTAATATCATCAATC
TGAAGACCTGCAGACTTCACTGCAGCAGGTATTGCAACAGCTGGGCCTAT
GCCCATGACAGAAGGATCTACACCAACAGCAGAAAAACTCCTGAACACAC
CAAGAATTGGAAGACCCTTCTGCACAGCCAAACTTCTCTTCATAAGAAGA
ACTGCTCCAGCTCCATCACTGACCTGGCTAGCATTCCCAGCAGTTGTCGT
CCCATCCTTTTTAAATGCAGGCTTCAGCTTAGCCAGATCTGCAATTGTTG
TGTTTGGTCGAATTCCATCATCCACAGAAATTGTGACACGCTTCTCCACT
CCAGTTTTTGGGT
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