CN186095

Overview
NameCN186095
Unique NameCN186095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA2B_ARATH (Proteasome subunit alpha type-2-B OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.732e-17
Identity = 52/157 (33.12%), Postives = 86/157 (54.78%), Query Frame = -3
Query:  321 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 791
            D R LV+++R +A ++   Y   +PV  L +  A   Q +TQ   +RP GV  +V   D++ GP+L++ DP+G +F  KA++ G     A  FLEK+   D      + + TAI TL+   + +  +  IE+G +  +   FRVL+  EID++L  +
Sbjct:   82 DFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDK-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTED--MELDDAIHTAILTLKEGFEGEISSKNIEIGKIGTDK-VFRVLTPAEIDDYLAEV 234          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA2A_ARATH (Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.732e-17
Identity = 52/157 (33.12%), Postives = 86/157 (54.78%), Query Frame = -3
Query:  321 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 791
            D R LV+++R +A ++   Y   +PV  L +  A   Q +TQ   +RP GV  +V   D++ GP+L++ DP+G +F  KA++ G     A  FLEK+   D      + + TAI TL+   + +  +  IE+G +  +   FRVL+  EID++L  +
Sbjct:   82 DFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDK-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTED--MELDDAIHTAILTLKEGFEGEISSKNIEIGKIGADK-VFRVLTPAEIDDYLAEV 234          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_PICTO (Proteasome subunit alpha OS=Picrophilus torridus GN=psmA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.486e-17
Identity = 52/155 (33.55%), Postives = 83/155 (53.55%), Query Frame = -3
Query:  330 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 794
            ADAR L+  AR    + +  YG  M ++ L K +AD+ Q YTQ+  +RP GV  +   +D   GPRLF CDPAG    +K  S G  + +   +LEK+ K +   +  E ++  I+ L+S + ++    E E+  + K    F V + EE+ ++L
Sbjct:   83 ADARVLIDFARISDQQEKVTYGSLMNIENLVKRVADQMQQYTQYGGVRPYGVSIIFAGLD-SIGPRLFDCDPAGTINEYKCVSIGAGKDQVTAYLEKEYKEN--LSEDEAIRMGIAALKSAVADESSMKEPEIASI-KMGETFHVFTSEEVSKYL 233          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA7L_MACFA (Proteasome subunit alpha type-7-like OS=Macaca fascicularis GN=PSMA7L PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.486e-17
Identity = 54/180 (30.00%), Postives = 91/180 (50.56%), Query Frame = -3
Query:  258 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD*EVVSRPIINAETKKQK 797
            TADAR ++ +AR E    +      + V+ + ++IA   Q YTQ    RP G+ A+++  D++  PRL++ DP+G +   KA + G   +    FLEK    D   +  E ++ AI  L  V+Q   K   IE+ ++ +  P  ++ S +E++ ++T I +   E        AE KK K
Sbjct:   79 TADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDNEAIKLAIKALLEVVQSGGK--NIELAIIRRNQP-LKMFSAKEVELYVTEIEKEKEE--------AEKKKSK 247          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSJ (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica GN=PAB1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.486e-17
Identity = 52/157 (33.12%), Postives = 86/157 (54.78%), Query Frame = -3
Query:  321 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 791
            D R LV+++R +A ++   Y   +PV  L +  A   Q +TQ   +RP GV  ++   D+  GP+L++ DP+G +F  KA++ G     A  FLEK+   D      + + TAI TL+   +    A+ IE+G++ + + EF+VLS  EI + L  +
Sbjct:   82 DFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDN-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTED--MELDDAIHTAILTLKEGYEGQISANNIEIGII-RSDREFKVLSPAEIKDFLEEV 234          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSI (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica GN=PAB1 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 7.486e-17
Identity = 52/157 (33.12%), Postives = 86/157 (54.78%), Query Frame = -3
Query:  321 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 791
            D R LV+++R +A ++   Y   +PV  L +  A   Q +TQ   +RP GV  ++   D+  GP+L++ DP+G +F  KA++ G     A  FLEK+   D      + + TAI TL+   +    A+ IE+G++ + + EF+VLS  EI + L  +
Sbjct:   82 DFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDN-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTED--MELDDAIHTAILTLKEGYEGQISANNIEIGII-RSDREFKVLSPAEIKDFLEEV 234          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_THEGJ (Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.777e-17
Identity = 53/160 (33.12%), Postives = 85/160 (53.12%), Query Frame = -3
Query:  315 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISE 794
            ADAR LV +AR EA  +R  YG  +P+ VL K I D  Q +TQ+  +RP G   ++  ++E+  P L++ DP+G +F  KA + G     A+   E+   +D     +  ++ AI  L   L+E    S IEV  ++ +   ++ L  EE+ ++L  I E
Sbjct:   85 ADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNEK--PELYETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYSDD--IDMEGAIKLAILALAKTLEEPSPES-IEVAYITLDEKRWKKLDKEEVAKYLNEILE 239          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_SULTO (Proteasome subunit alpha OS=Sulfolobus tokodaii GN=psmA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.668e-16
Identity = 51/152 (33.55%), Postives = 76/152 (50.00%), Query Frame = -3
Query:  345 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ--EDFKASEIEVGVVSKENPEFRVLSIEE 794
            +D R L+  AR +A + R  Y   + +D L K ++D  Q+YTQH  +RP GV  ++  ID    P+L   +P+G F  + A + G     A  + EK  + D     Q+T+   I  L S L+  E    S IEVG    ++  FR +S EE
Sbjct:   85 SDGRILIDYARSQALQHRLIYDEPINIDYLTKLVSDVKQMYTQHGGVRPFGVALIIGGIDRGKTPKLLMTEPSGQFMPYYAVAIGQGGYTATEYFEKNYRED--LNMQDTILLGIRALASTLKPGEKLAPSNIEVGFADVDSGMFRKMSFEE 234          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA7_BOVIN (Proteasome subunit alpha type-7 OS=Bos taurus GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.668e-16
Identity = 56/180 (31.11%), Postives = 92/180 (51.11%), Query Frame = -3
Query:  258 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD*EVVSRPIINAETKKQK 797
            TADAR ++ +AR E    R      + V+ + ++IA   Q YTQ    RP G+ A+++  D +  PRL++ DP+G +   KA + G   +    FLEK   ++   T   T++  I  L  V+Q   K   IE+ V+ ++ P  ++L+ EEI++++  I +   E         E KKQK
Sbjct:   77 TADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGK--NIELAVMRRDQP-LKILNPEEIEKYVAEIEKEKEE--------NEKKKQK 245          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA2_CAEEL (Proteasome subunit alpha type-2 OS=Caenorhabditis elegans GN=pas-2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.668e-16
Identity = 54/155 (34.84%), Postives = 79/155 (50.97%), Query Frame = -3
Query:  330 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-PRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 791
            D R LV++AR  A E+   YG EMP   L   IA   Q YTQ   +RP G   ++   D+  G P LF+CDP+G +F  KAT+ G  +  A  FLEK+     A    + + TA+ TL+         + +EV V +     F  L+ +++ +HL
Sbjct:   78 DFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSE--ALELDDGIHTALLTLRESFDVGMNENNVEVAVCNSTG--FHRLTKQQVHDHL 228          
The following BLAST results are available for this feature:
BLAST of CN186095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
PSA2B_ARATH5.732e-1733.12Proteasome subunit alpha type-2-B OS=Arabidopsis t... [more]
PSA2A_ARATH5.732e-1733.12Proteasome subunit alpha type-2-A OS=Arabidopsis t... [more]
PSMA_PICTO7.486e-1733.55Proteasome subunit alpha OS=Picrophilus torridus G... [more]
PSA7L_MACFA7.486e-1730.00Proteasome subunit alpha type-7-like OS=Macaca fas... [more]
PSA2_ORYSJ7.486e-1733.12Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2_ORYSI7.486e-1733.12Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSMA_THEGJ9.777e-1733.13Proteasome subunit alpha OS=Thermococcus gammatole... [more]
PSMA_SULTO1.668e-1633.55Proteasome subunit alpha OS=Sulfolobus tokodaii GN... [more]
PSA7_BOVIN1.668e-1631.11Proteasome subunit alpha type-7 OS=Bos taurus GN=P... [more]
PSA2_CAEEL1.668e-1634.84Proteasome subunit alpha type-2 OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186095 ID=CN186095; Name=CN186095; organism=Citrus sinensis; type=EST; length=799bp
TTTTTTTTTTTTTTTTTCTAAAATTGCCATTCATCATAATAATCACTATG
GCCATGAAAGGCACTTGTCAATAGTCGTTATCAAGCCAATGTAGTAGTAA
AAGTCAACAGCTACCACTAGCACAAAGCACTTCCCCTGGTTGGCACAGCA
TAGTCACATAACTTGTTTTTCAACGTTTTGTTTTCTGCTTTGGAGGGCAA
TGGCTGTGTATTACCGAATGCACTTAAAATTATAAATTCAAGATACAGGG
AAAAGCATTTTTGTTTTTTGGTTTCAGCATTTATGATGGGGCGTGAAACC
ACCTCCTAATCTCGTTCACTTATAGCAGTCAAGTGCTCATCGATCTCCTC
GATGGACAAAACTCTGAATTCTGGATTCTCCTTGCTCACCACGCCAACCT
CAATCTCACTCGCCTTAAAATCCTCTTGCAGGACTGATTGCAGGGTGGAA
ATTGCAGTCTGCACAGTTTCTTGAAAGGTAAACGCAGGATCATTCTTCAT
CTTCTTCTCCAAGAAATTAATTGCCTCTTGCTCCTTCAATCCAGCACTTG
TTGCCTTGTGGCCAAAGAAATGGCCAGCAGGGTCACACTTAAAGAGGCGA
GGTCCACATTCTTCGTCAATACTCAAAACCATAGCAACTACACCAAGTGG
TCTCATATAAGCATGTTGAGTATATACTTGTGATTTGTCTGCAATCCATT
TGGCTAACACATCCACAGGCATTTCATATCCATATTTGAAGCGAAACTCA
GCGGCTTCATATCTTGCCTGCTGAACCAATGTCCTTGCATCAGCTGTCA
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