DC900162

Overview
NameDC900162
Unique NameDC900162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C39_ARATH (Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.507e-19
Identity = 47/86 (54.65%), Postives = 65/86 (75.58%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRF 259
            AV+RAFGD+ LK ++ ++P +  E+ID   EFLILASDGLW V++N+EAV  IK I+D + AAK L +EA  R S+D+I+ VVV+F
Sbjct:  203 AVARAFGDKSLKMHLSSEPYVTVEIIDDDAEFLILASDGLWKVMSNQEAVDSIKGIKDAKAAAKHLAEEAVARKSSDDISVVVVKF 288          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C10_ARATH (Probable protein phosphatase 2C 10 OS=Arabidopsis thaliana GN=At1g34750 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.093e-18
Identity = 43/85 (50.59%), Postives = 64/85 (75.29%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVR 256
            AVSRAFGD+ LK ++ +DP++++  ID   + L+LASDGLW V+ N+EA+ + + I+DP +AAK L  EA +R S D+I+C+VVR
Sbjct:  196 AVSRAFGDKSLKTHLRSDPDVKDSSIDDHTDVLVLASDGLWKVMANQEAIDIARRIKDPLKAAKELTTEALRRDSKDDISCIVVR 280          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C31_ARATH (Protein kinase and PP2C-like domain-containing protein OS=Arabidopsis thaliana GN=At2g40860/At2g40870 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.721e-16
Identity = 41/84 (48.81%), Postives = 59/84 (70.24%), Query Frame = 2
Query:    5 VSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIK-PIQDPEEAAKRLMQEAYQRGSADNITCVVV 253
            V+R+ GD  LK  V A+PEI E ++ +  EFL++ASDGLWDV+ +EE + +I+  +++P   +KRL  EA  RGS DNIT +VV
Sbjct:  563 VTRSIGDDDLKPAVTAEPEISETILSADDEFLVMASDGLWDVMNDEEVIGIIRDTVKEPSMCSKRLATEAAARGSGDNITVIVV 646          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C28_ARATH (Probable protein phosphatase 2C 28 OS=Arabidopsis thaliana GN=At2g34740 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.658e-15
Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFL 262
            A++RAFGD  LK+++   P I+   I    +FLILASDGLW V++N+E    IK   + EEAAK L+ +A  RGS D+I+CVVV FL
Sbjct:  149 AMTRAFGDGGLKEHISVIPNIEIAEIHDDTKFLILASDGLWKVMSNDEVWDQIKKRGNAEEAAKMLIDKALARGSKDDISCVVVSFL 235          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C30_ARATH (Probable protein phosphatase 2C 30 OS=Arabidopsis thaliana GN=PP2C5 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.828e-15
Identity = 42/91 (46.15%), Postives = 64/91 (70.33%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKP----IQDPE--EAAKRLMQEAYQRGSADNITCVVVR 256
            AVSR  GDR LK++V+A+PE +   I    EFLILASDGLWD VTN+EAV +++P    +++P    A K+L + + +RGS D+I+ ++++
Sbjct:  294 AVSRGIGDRYLKEWVIAEPETRTLRIKPEFEFLILASDGLWDKVTNQEAVDVVRPYCVGVENPMTLSACKKLAELSVKRGSLDDISLIIIQ 384          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C32_ORYSJ (Probable protein phosphatase 2C 32 OS=Oryza sativa subsp. japonica GN=Os03g0292100 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.825e-15
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEE------AAKRLMQEAYQRGSADNITCVVVR 256
            AVSR  GD  LKQ+VV+DP+     +DS  EFLILASDGLWD V N+EAV + +P+    +      A +RL++ A  RGS D+I+ V+++
Sbjct:  295 AVSRGIGDAHLKQWVVSDPDTTTLGVDSQCEFLILASDGLWDKVENQEAVDIARPLYISNDKASRMTACRRLVETAVTRGSTDDISIVIIQ 385          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C04_ORYSJ (Protein kinase and PP2C-like domain-containing protein OS=Oryza sativa subsp. japonica GN=Os01g0541900 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.825e-15
Identity = 41/84 (48.81%), Postives = 59/84 (70.24%), Query Frame = 2
Query:    5 VSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIK-PIQDPEEAAKRLMQEAYQRGSADNITCVVV 253
            V+R+ GD  LK  V A PE+ E ++    EFL++ASDGLWDV++NE+ +++IK  +++P   +KRL  EA  RGS DNIT +VV
Sbjct:  562 VTRSIGDDDLKPAVTAQPEVIETILSPDDEFLVMASDGLWDVMSNEDVLSIIKDTVKEPGMCSKRLATEAAARGSKDNITVIVV 645          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: PP2C1_SCHPO (Protein phosphatase 2C homolog 1 OS=Schizosaccharomyces pombe GN=ptc1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.230e-15
Identity = 45/92 (48.91%), Postives = 58/92 (63.04%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQYVVADPEIQEEVI-DSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQG 274
            AV+RA GD  LK+ V A P   E  I +   EF I+A DGLWDVV+++EAV  ++    P EAA RL++ A +R S DNITC+VV    N G
Sbjct:  237 AVTRALGDTYLKELVSAHPFTTETRIWNGHDEFFIIACDGLWDVVSDQEAVDFVRNFVSPREAAVRLVEFALKRLSTDNITCIVVNLTRNPG 328          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: PP2C1_YEAST (Protein phosphatase 2C homolog 1 OS=Saccharomyces cerevisiae GN=PTC1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.027e-13
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVV 253
            AV+R+ GD+     VV  P      I S  +FLILA DGLWDV+ +++A  +IK I +P EAAK L++ A + G+ DN+T +VV
Sbjct:  196 AVTRSLGDKFFDSLVVGSPFTTSVEITSEDKFLILACDGLWDVIDDQDACELIKDITEPNEAAKVLVRYALENGTTDNVTVMVV 279          
BLAST of DC900162 vs. ExPASy Swiss-Prot
Match: P2C02_ARATH (Probable protein phosphatase 2C 2 OS=Arabidopsis thaliana GN=At1g07160 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.703e-13
Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = 2
Query:    2 AVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPI-------QDPEEAAKRLMQEAYQRGSADNITCVVVR 256
            AVSR  GD  LKQ+++++PEI    I+   EFLILASDGLWD V+N+EAV + +P        + P  A K+L+  +  RGS D+I+ ++++
Sbjct:  284 AVSRGIGDAHLKQWIISEPEINILRINPQHEFLILASDGLWDKVSNQEAVDIARPFCKGTDQKRKPLLACKKLVDLSVSRGSLDDISVMLIQ 375          
The following BLAST results are available for this feature:
BLAST of DC900162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
P2C39_ARATH5.507e-1954.65Probable protein phosphatase 2C 39 OS=Arabidopsis ... [more]
P2C10_ARATH2.093e-1850.59Probable protein phosphatase 2C 10 OS=Arabidopsis ... [more]
P2C31_ARATH9.721e-1648.81Protein kinase and PP2C-like domain-containing pro... [more]
P2C28_ARATH1.658e-1550.57Probable protein phosphatase 2C 28 OS=Arabidopsis ... [more]
P2C30_ARATH2.828e-1546.15Probable protein phosphatase 2C 30 OS=Arabidopsis ... [more]
P2C32_ORYSJ4.825e-1547.25Probable protein phosphatase 2C 32 OS=Oryza sativa... [more]
P2C04_ORYSJ4.825e-1548.81Protein kinase and PP2C-like domain-containing pro... [more]
PP2C1_SCHPO8.230e-1548.91Protein phosphatase 2C homolog 1 OS=Schizosaccharo... [more]
PP2C1_YEAST2.027e-1345.24Protein phosphatase 2C homolog 1 OS=Saccharomyces ... [more]
P2C02_ARATH7.703e-1343.48Probable protein phosphatase 2C 2 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionDC900162 VSS Citrus sinensis cDNA clone VS27V81 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900162 ID=DC900162; Name=DC900162; organism=Citrus sinensis; type=EST; length=644bp
TGCCGTTTCTCGCGCATTTGGTGACAGACTCTTGAAGCAGTATGTTGTTG
CTGATCCCGAAATTCAGGAGGAAGTTATTGACAGCTCCCTTGAGTTTCTT
ATCCTTGCAAGTGATGGACTTTGGGATGTCGTCACAAATGAGGAAGCTGT
TGCGATGATCAAACCAATCCAGGATCCAGAGGAGGCAGCGAAGAGGCTGA
TGCAGGAGGCATATCAGAGAGGCAGCGCAGACAACATCACCTGTGTCGTT
GTTCGGTTCTTGGCCAATCAAGGTGGTTCATCCTTTCCTGGCTCTGCATG
AACATCCTTTCATAGCCACCGCTCTGCTTTTGTTCTCTACATGGGCATCC
TTTCAGTGGTCTACAGCTAGTAGTCATAGAAAAATTACAGTTTCGTTGTA
CTTTGTAATGATAGAACATGAACAAAAAGCTTACCCCGGCCGTTAATGTG
TATTACGTATTATCAGTCTCTGGAATAGATGTGTCCGAAGTTTAACATCT
GTTCTCGGTCCTCGAAATGTAGCTAGAAATGTGTATGTATGCATGTGTAA
AGAATTGGCAAAGACTTCTAAAGTTTCAATTTCCTATGTTGTAAATGTAG
ATGAAACTCTTCTGTTGCTCATAGTTTAATATGCGTTTTCATTT
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