CN186066

Overview
NameCN186066
Unique NameCN186066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL5_PONAB (Cullin-5 OS=Pongo abelii GN=CUL5 PE=2 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 5.219e-18
Identity = 71/230 (30.87%), Postives = 119/230 (51.74%), Query Frame = -2
Query:  149 LCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADR--LSYREIEQATEIPASDLKRCLQSLACVRG--KNVLRKEPM---SKDIGEDDAFFVNDKFTS-KFYKVK-------IGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 793
            L  +   +Y   H+GR+L W   M +  I      GQ ++L V+T+Q+ VL  +N   R  +S+  ++ ATE+P ++L+R L SL       + VL  EP     KD  E   F VN +F+  K  KV+       IG +  Q  +E  ++E  + + + R  + + AI++IMK R+ + +  +  E+ + L++ FL     IK++IE LIE  ++ RD  D   + Y+A
Sbjct:  554 LIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQ-YDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRL--QLTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 780          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL5_HUMAN (Cullin-5 OS=Homo sapiens GN=CUL5 PE=1 SV=4)

HSP 1 Score: 91.6633 bits (226), Expect = 5.219e-18
Identity = 71/230 (30.87%), Postives = 119/230 (51.74%), Query Frame = -2
Query:  149 LCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADR--LSYREIEQATEIPASDLKRCLQSLACVRG--KNVLRKEPM---SKDIGEDDAFFVNDKFTS-KFYKVK-------IGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 793
            L  +   +Y   H+GR+L W   M +  I      GQ ++L V+T+Q+ VL  +N   R  +S+  ++ ATE+P ++L+R L SL       + VL  EP     KD  E   F VN +F+  K  KV+       IG +  Q  +E  ++E  + + + R  + + AI++IMK R+ + +  +  E+ + L++ FL     IK++IE LIE  ++ RD  D   + Y+A
Sbjct:  554 LIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQ-YDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRL--QLTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 780          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL5_RAT (Cullin-5 OS=Rattus norvegicus GN=Cul5 PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 1.163e-17
Identity = 70/230 (30.43%), Postives = 118/230 (51.30%), Query Frame = -2
Query:  149 LCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADR--LSYREIEQATEIPASDLKRCLQSLACVRG--KNVLRKEPM---SKDIGEDDAFFVNDKFTS-KFYKVK-------IGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 793
            L  +   +Y   H+GR+L W   M +  I      GQ ++L V+T+Q+ VL  +N   R  +S+  ++ ATE+P ++L+R L SL       + VL  +P     KD  E   F VN  F+  K  KV+       IG +  Q  +E  ++E  + + + R  + + AI++IMK R+ + +  +  E+ + L++ FL     IK++IE LIE  ++ RD  D   + Y+A
Sbjct:  554 LIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQ-YDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYDPQVNSPKDFTEGTLFSVNQDFSLIKNAKVQKRGKINLIGRL--QLTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDEADINTFIYMA 780          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL5_MOUSE (Cullin-5 OS=Mus musculus GN=Cul5 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 3.383e-17
Identity = 69/230 (30.00%), Postives = 118/230 (51.30%), Query Frame = -2
Query:  149 LCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADR--LSYREIEQATEIPASDLKRCLQSLACVRG--KNVLRKEPM---SKDIGEDDAFFVNDKFTS-KFYKVK-------IGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 793
            L  +   +Y   H+GR+L W   M +  I      GQ ++L V+T+Q+ VL  +N   R  +S+  ++ ATE+P ++L+R L SL       + VL  +P     KD  E   F VN  F+  K  KV+       IG +  Q  +E  ++E  + + + R  + + AI++IMK R+ + +  +  E+ + L++ FL     IK+++E LIE  ++ RD  D   + Y+A
Sbjct:  554 LIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQ-YDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYDPQVNSPKDFTEGTLFSVNQDFSLIKNAKVQKRGKINLIGRL--QLTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQMEWLIEHRYIRRDEADINTFIYMA 780          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL5_RABIT (Cullin-5 OS=Oryctolagus cuniculus GN=CUL5 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.285e-16
Identity = 69/230 (30.00%), Postives = 116/230 (50.43%), Query Frame = -2
Query:  149 LCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADR--LSYREIEQATEIPASDLKRCLQSLACVRG--KNVLRKEPM---SKDIGEDDAFFVNDKFTS-KFYKVK-------IGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 793
            L  +   +Y   H+GR+L W   M +  I      GQ ++L V+T+Q+ VL  +N   R  +S+  ++ ATE+P ++L+R L SL       + VL  EP     KD  E   F VN +F+  K  KV+       IG +  Q  +E  ++E  + + + R  +     ++IMK R+ + +  +  E+ + L++ FL     IK++IE LIE  ++ RD  D   + Y+A
Sbjct:  554 LIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQ-YDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRL--QLTTERMREEENEGIVQLRILRTRKLYIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 780          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL5_CAEEL (Cullin-5 OS=Caenorhabditis elegans GN=cul-5 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.212e-15
Identity = 61/229 (26.64%), Postives = 113/229 (49.34%), Query Frame = -2
Query:  149 KFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNA--DRLSYREIEQATEIPASDLKRCLQSLAC---VRGKNVLRKEPMS----KDIGEDDAFFVNDKF-------TSKFYKVK-IGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 784
            +  ++Y   H GR+L W  +  S  +      G + +L  +T+QM VL  FN+   D++S   +  ATE+P ++L R L SL     +R + +L   P +    +D  +   F +N  F       + +  KV  IG +    E+  EK+   + +   R+ +++  IV+I+K+R+      +  E+ + L+  F+ N   IK++I+ LIE  ++ER   D   + Y++
Sbjct:  539 EMEAFYKKQHNGRKLCWMHHWSSGTMVFGTANGGRFDLECTTFQMAVLFCFNDRAHDKISLETLRLATELPDAELNRTLLSLVAYPKMRYQILLCDVPSTTVTARDFTDSTKFLINHDFNVVKNGKSQQRGKVNLIGRLQLSLEANAEKEH--ESIVALRELRVQEGIVKILKTRKTYTLAQLTMELVEILKPLFIPNRKIIKEQIDWLIENKYMERRADDINTFVYIS 765          
The following BLAST results are available for this feature:
BLAST of CN186066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
CUL5_PONAB5.219e-1830.87Cullin-5 OS=Pongo abelii GN=CUL5 PE=2 SV=3[more]
CUL5_HUMAN5.219e-1830.87Cullin-5 OS=Homo sapiens GN=CUL5 PE=1 SV=4[more]
CUL5_RAT1.163e-1730.43Cullin-5 OS=Rattus norvegicus GN=Cul5 PE=1 SV=3[more]
CUL5_MOUSE3.383e-1730.00Cullin-5 OS=Mus musculus GN=Cul5 PE=1 SV=3[more]
CUL5_RABIT1.285e-1630.00Cullin-5 OS=Oryctolagus cuniculus GN=CUL5 PE=2 SV=... [more]
CUL5_CAEEL9.212e-1526.64Cullin-5 OS=Caenorhabditis elegans GN=cul-5 PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186066 ID=CN186066; Name=CN186066; organism=Citrus sinensis; type=EST; length=800bp
CTTTTTTTTGGAAAAACGGGTTATCTTGAAACAAACTGAGATTGCCCACT
TTTTAAAACAATTTTCGACTTACCAACTAACGTACAAATTGAATTGTTTG
CGCTAAAATTTCCTCAAGAAACAAGTAATCTTCTCATGCCAATCTTTAGG
CAAGATACCGATACAATTTTCTGTCTACATTATCCCTCTCCAAGAAATCC
CTTTCAATGAGGGACTCAATCCGTTTTTTAATCTCCGTGGGGTTTGCCAG
AAACCGTGACTGCAACTGCTTTGTGACCTCAGCAATTATGTTGTTATGAT
CGAGTACTCTCCTTGATTTCATGATTCTAACGATGGCAGCTTCAATCTGA
GGCTTCCTGTCCTCCTCCACTCTTTGCCGAGTTTCCTGTTTCTCTGGTTC
TGACTCCTTTTGTGCAACCACAGTTCCTATCTTTACCTTATAGAATTTGC
TCGTGAACTTGTCATTGACAAAGAATGCATCATCTTCACCAATGTCTTTA
CTCATAGGTTCTTTCCGAAGAACATTCTTCCCCCTCACACAAGCCAGAGA
TTGCAGGCACCTTTTCAAGTCTGAAGCAGGAATCTCTGTTGCCTGCTCTA
TTTCCCTGTAGCTAAGCCGATCAGCATTGTTAAACAGCATGAGAACACAC
ATTTGGTATGTGGAGACATTCAGCTCATGCTTCTGACCTTTACCAAAGGT
TGCTTTTATATCTGCTGAGCCCATGTTGGTTTGCCAGGACAATCTCCGAC
CAGTATGAGTTCCAAGGTAGTATGATCTAAATTTCTCACACAGAGCTGAC
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