DC900142

Overview
NameDC900142
Unique NameDC900142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL37_ICTPU (60S ribosomal protein L37 OS=Ictalurus punctatus GN=rpl37 PE=3 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 3.270e-26
Identity = 52/73 (71.23%), Postives = 60/73 (82.19%), Query Frame = 1
Query:    1 KRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 219
            KRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+++ V RRF++GFREGT
Sbjct:   10 KRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRSTTGTGRMRHMKVVFRRFRNGFREGT 82          
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL37_CANAL (60S ribosomal protein L37 (Fragment) OS=Candida albicans GN=RPL37 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.577e-26
Identity = 49/72 (68.06%), Postives = 62/72 (86.11%), Query Frame = 1
Query:    1 KRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 216
            KR NK+HTLC RCGRRSFH+QK  C++C YPAA+ R++NW++KA RR+TTGTGRM YL+HV RRFK+GF+ G
Sbjct:    8 KRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKMRSHNWALKAKRRRTTGTGRMAYLKHVTRRFKNGFQTG 79          
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL37B_YEAST (60S ribosomal protein L37-B OS=Saccharomyces cerevisiae GN=RPL37B PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 5.577e-26
Identity = 49/73 (67.12%), Postives = 62/73 (84.93%), Query Frame = 1
Query:    1 KRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 219
            KR NK+HTLC RCGRRSFH+QK  C++C YP+A+ R++NW+ KA RR TTGTGRMRYL+HV RRFK+GF+ G+
Sbjct:   10 KRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPSAKTRSHNWAAKAKRRHTTGTGRMRYLKHVSRRFKNGFQTGS 82          
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL37_EMENI (60S ribosomal protein L37 OS=Emericella nidulans GN=rpl37 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.768e-25
Identity = 52/73 (71.23%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 KRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 219
            KR NKTHTLC RCGRRS+H+QKS CA C YPAA+ R YNWS KA RRKTTG+GR  +LR V RRFK+GF+ GT
Sbjct:   10 KRHNKTHTLCRRCGRRSYHIQKSTCANCGYPAAKTRKYNWSEKAKRRKTTGSGRTAHLRDVHRRFKNGFQVGT 82          
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL37_DEBHA (60S ribosomal protein L37 OS=Debaryomyces hansenii GN=RPL37 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.615e-25
Identity = 48/72 (66.67%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    1 KRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 216
            KR NK+H LC RCG+RSFH+QK  CA+C YPAA+ R++NW+ KA RR+TTGTGRM YL+HV RRFK+GF+ G
Sbjct:   10 KRHNKSHVLCNRCGKRSFHVQKKTCASCGYPAAKLRSHNWATKAKRRRTTGTGRMAYLKHVSRRFKNGFQTG 81          
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL37B_SCHPO (60S ribosomal protein L37-B OS=Schizosaccharomyces pombe GN=rpl37b PE=1 SV=4)

HSP 1 Score: 112.464 bits (280), Expect = 1.052e-24
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    4 RRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 216
            R NK+HT+C RCG+RSFH+QKS CA C YPAA+ R+YNW  KA RR+TTGTGRM YL+ V R FK+GFR G
Sbjct:   11 RHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRSG 81          
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL37A_SCHPO (60S ribosomal protein L37-A OS=Schizosaccharomyces pombe GN=rpl37a PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.374e-24
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    4 RRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 216
            R NK+HT+C RCG+RSFH+QKS CA C YPAA+ R+YNW  KA RR+TTGTGRM YL+ V R FK+GFR G
Sbjct:   11 RHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRAG 81          
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL37_DICDI (60S ribosomal protein L37 OS=Dictyostelium discoideum GN=rpl37 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.818e-24
Identity = 46/73 (63.01%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 KRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 219
            +R  K+HTLC RCG+ SFH+QK  CA+C YP+A+ R+YNWS+KA RRKTTGTGR RYL+ V +RF SGF+E +
Sbjct:   10 RRHTKSHTLCRRCGKSSFHIQKKTCASCGYPSAKTRSYNWSIKAQRRKTTGTGRTRYLKTVHKRFNSGFKEAS 82          
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL37_SCHMA (60S ribosomal protein L37 OS=Schistosoma mansoni GN=RPL37 PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 1.163e-23
Identity = 47/72 (65.28%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    1 KRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 216
            KR NK+HT C RCGR+S+H+QK  C++C YP+AR R YNWS KA RR+TTGTGRM +L+ V RRFK GFR G
Sbjct:   10 KRHNKSHTQCRRCGRKSYHIQKKTCSSCGYPSARLRKYNWSEKAKRRRTTGTGRMLHLKRVHRRFKQGFRSG 81          
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL372_DROME (Probable 60S ribosomal protein L37-B OS=Drosophila melanogaster GN=RpL37b PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.591e-23
Identity = 46/72 (63.89%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 KRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 216
            KR NKTHT+C RCG  S+HLQKS+C+ C YPAA+ R++NWS KA  RK  GTGRMRYL+++ RRF++G REG
Sbjct:   10 KRHNKTHTICRRCGNSSYHLQKSKCSQCGYPAAKTRSFNWSRKAKGRKAQGTGRMRYLKNLRRRFRNGLREG 81          
The following BLAST results are available for this feature:
BLAST of DC900142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL37_ICTPU3.270e-2671.2360S ribosomal protein L37 OS=Ictalurus punctatus G... [more]
RL37_CANAL5.577e-2668.0660S ribosomal protein L37 (Fragment) OS=Candida al... [more]
RL37B_YEAST5.577e-2667.1260S ribosomal protein L37-B OS=Saccharomyces cerev... [more]
RL37_EMENI2.768e-2571.2360S ribosomal protein L37 OS=Emericella nidulans G... [more]
RL37_DEBHA3.615e-2566.6760S ribosomal protein L37 OS=Debaryomyces hansenii... [more]
RL37B_SCHPO1.052e-2467.6160S ribosomal protein L37-B OS=Schizosaccharomyces... [more]
RL37A_SCHPO1.374e-2467.6160S ribosomal protein L37-A OS=Schizosaccharomyces... [more]
RL37_DICDI6.818e-2463.0160S ribosomal protein L37 OS=Dictyostelium discoid... [more]
RL37_SCHMA1.163e-2365.2860S ribosomal protein L37 OS=Schistosoma mansoni G... [more]
RL372_DROME2.591e-2363.89Probable 60S ribosomal protein L37-B OS=Drosophila... [more]

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Properties
Property NameValue
Genbank descriptionDC900142 VSS Citrus sinensis cDNA clone VS27V62 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900142 ID=DC900142; Name=DC900142; organism=Citrus sinensis; type=EST; length=487bp
AAGAGGAGAAACAAGACACACACTTTGTGTGTGCGATGTGGCCGTCGCAG
CTTCCATCTTCAGAAGAGTCGTTGCGCTGCTTGTGCTTACCCCGCTGCTC
GCAAGAGAACGTATAACTGGAGTGTGAAGGCAATCCGAAGAAAGACCACT
GGAACCGGCAGGATGAGGTATCTGCGCCATGTACCTCGCAGGTTCAAGAG
CGGCTTCAGAGAAGGTACTCAGGCAGCACCAAGGAAGAAGGGAGCGGCTG
CCTCTGCTTAAGGAGTTGAAGGGTAATTTTGGGCGTGAATCAGCACCTCA
TTATAGATTTAGTCTTCTTTAATGTGTGGAGACAAGATTCATGGGAACAT
AATTTTGAAAAAGGATGTTATTTGTTTTTGTGCTTAGTTGTTTTCAATTA
TGATTACTCTGTAGTCTTTTTCAATTTTGGACAAGATGAATGAGTTTATT
GTTGTTTGACCTCCTTTAATTACTTCATGTTTTGACA
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