DC900142

Overview
NameDC900142
Unique NameDC900142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL37_CAEEL (60S ribosomal protein L37 OS=Caenorhabditis elegans GN=rpl-37 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 9.845e-23
Identity = 46/73 (63.01%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    1 KRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 219
            K+  K+HTLC RCG+ SFH+QK RCA+C Y  A+KRTYNW  K+IRR+TTGTGR R+LR V  RF++GFR  T
Sbjct:   10 KKHVKSHTLCKRCGKSSFHIQKKRCASCGYQDAKKRTYNWGAKSIRRRTTGTGRTRHLRDVNARFRNGFRGTT 82          
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL37_LEIIN (60S ribosomal protein L37 OS=Leishmania infantum GN=RPL37 PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 2.681e-20
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    1 KRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFR 210
            +R  +TH LC RCGR S+H+Q  RCAACAYP A +R YNWSVKAI+R+ TGTGR RYL+ V RR  + F+
Sbjct:   10 QRHGRTHILCRRCGRNSYHVQWERCAACAYPRASRRRYNWSVKAIKRRRTGTGRCRYLKVVNRRIANHFK 79          
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL37_LEIDO (60S ribosomal protein L37 OS=Leishmania donovani GN=RPL37 PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 2.681e-20
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    1 KRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFR 210
            +R  +TH LC RCGR S+H+Q  RCAACAYP A +R YNWSVKAI+R+ TGTGR RYL+ V RR  + F+
Sbjct:   10 QRHGRTHILCRRCGRNSYHVQWERCAACAYPRASRRRYNWSVKAIKRRRTGTGRCRYLKVVNRRIANHFK 79          
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL37_SOLLC (60S ribosomal protein L37 (Fragment) OS=Solanum lycopersicum GN=RPL37 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.573e-20
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 1
Query:   70 RCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 222
            RC+ACAYPAAR R YNWSVKA+RRKTTGTGRMRYLR+VPRRFK+ FREGT+
Sbjct:    2 RCSACAYPAARLRKYNWSVKALRRKTTGTGRMRYLRNVPRRFKTNFREGTE 52          
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL37_ENCCU (60S ribosomal protein L37 OS=Encephalitozoon cuniculi GN=RPL37 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.819e-12
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    4 RRNKTHT-LCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFR 210
            ++NK +T +C RCGR+S+H QK+ C++C YP  + R    S+KA RR+T GTGRMRY++   R  K+G +
Sbjct:   10 KKNKRNTEMCRRCGRQSYHKQKNSCSSCGYPNPKMRNPG-SIKARRRRTIGTGRMRYMKRELRAAKNGHK 78          
The following BLAST results are available for this feature:
BLAST of DC900142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL37_CAEEL9.845e-2363.0160S ribosomal protein L37 OS=Caenorhabditis elegan... [more]
RL37_LEIIN2.681e-2061.4360S ribosomal protein L37 OS=Leishmania infantum G... [more]
RL37_LEIDO2.681e-2061.4360S ribosomal protein L37 OS=Leishmania donovani G... [more]
RL37_SOLLC4.573e-2084.3160S ribosomal protein L37 (Fragment) OS=Solanum ly... [more]
RL37_ENCCU7.819e-1247.1460S ribosomal protein L37 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionDC900142 VSS Citrus sinensis cDNA clone VS27V62 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900142 ID=DC900142; Name=DC900142; organism=Citrus sinensis; type=EST; length=487bp
AAGAGGAGAAACAAGACACACACTTTGTGTGTGCGATGTGGCCGTCGCAG
CTTCCATCTTCAGAAGAGTCGTTGCGCTGCTTGTGCTTACCCCGCTGCTC
GCAAGAGAACGTATAACTGGAGTGTGAAGGCAATCCGAAGAAAGACCACT
GGAACCGGCAGGATGAGGTATCTGCGCCATGTACCTCGCAGGTTCAAGAG
CGGCTTCAGAGAAGGTACTCAGGCAGCACCAAGGAAGAAGGGAGCGGCTG
CCTCTGCTTAAGGAGTTGAAGGGTAATTTTGGGCGTGAATCAGCACCTCA
TTATAGATTTAGTCTTCTTTAATGTGTGGAGACAAGATTCATGGGAACAT
AATTTTGAAAAAGGATGTTATTTGTTTTTGTGCTTAGTTGTTTTCAATTA
TGATTACTCTGTAGTCTTTTTCAATTTTGGACAAGATGAATGAGTTTATT
GTTGTTTGACCTCCTTTAATTACTTCATGTTTTGACA
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