CN186028

Overview
NameCN186028
Unique NameCN186028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_SULTO (50S ribosomal protein L10e OS=Sulfolobus tokodaii GN=rpl10e PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.291e-18
Identity = 58/149 (38.93%), Postives = 83/149 (55.70%), Query Frame = -2
Query:  328 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 768
            +  +  GVP PKI  + +G      D   + + LV+ EK  +   ALEAAR+   K +    G D  F L V  +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+  +G +++  + K  +   A++A   A  K P + KI
Sbjct:   19 RKEYIPGVPMPKITKFTMGNVNGNYD---YELRLVALEKGQIRHNALEAARVLALKQLTNKTGSDQNFALIVLKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARIERLGDIIMIAKVKKEHLEIAKKAFEAAASKIPLKTKI 164          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_SULIY (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.203e-18
Identity = 56/149 (37.58%), Postives = 85/149 (57.05%), Query Frame = -2
Query:  328 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 768
            +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:   19 RKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_SULIN (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.203e-18
Identity = 56/149 (37.58%), Postives = 85/149 (57.05%), Query Frame = -2
Query:  328 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 768
            +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:   19 RKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_SULIM (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.203e-18
Identity = 56/149 (37.58%), Postives = 85/149 (57.05%), Query Frame = -2
Query:  328 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 768
            +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:   19 RKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_SULIL (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.203e-18
Identity = 56/149 (37.58%), Postives = 85/149 (57.05%), Query Frame = -2
Query:  328 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 768
            +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:   19 RKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_SULIK (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.203e-18
Identity = 56/149 (37.58%), Postives = 85/149 (57.05%), Query Frame = -2
Query:  328 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 768
            +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:   19 RKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_SULIA (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.16.27) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.203e-18
Identity = 56/149 (37.58%), Postives = 85/149 (57.05%), Query Frame = -2
Query:  328 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 768
            +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:   19 RKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_HALWD (50S ribosomal protein L10e OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.203e-18
Identity = 53/155 (34.19%), Postives = 89/155 (57.42%), Query Frame = -2
Query:  319 FCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRA--KFKFPGR------QKIIVS 759
            +  G+P  KI  +++G  + G  ++P  + L   E+  +   +LE+AR++ N+ M K  G+D + + +R  P  +LR NK  + AGADR+  GMR AFGKP GT AR+   + + ++ C+  ++  A++ LRRA  K   P R      QK+++S
Sbjct:   22 YVTGIPGSKIAQHNMGNLQTGPQDYPVQISLRIEEECQIRHGSLESARLSANRTMLKQVGQDNYKMVLRKFPHQILRENKQATGAGADRVSDGMRQAFGKPVGTAARIQQNERVFTIYCEVDDASVAKDGLRRAYNKMSPPCRIDVEKGQKLLIS 176          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_SULSO (50S ribosomal protein L10e OS=Sulfolobus solfataricus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.758e-18
Identity = 55/149 (36.91%), Postives = 85/149 (57.05%), Query Frame = -2
Query:  328 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 768
            +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K ++K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G+ L+ ++ K  +   A+EAL+ A  K P R +I
Sbjct:   19 RKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTLTLKTLSKKTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGETLIVIKVKKEHLEFAKEALKIASKKLPLRTRI 164          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_HALLT (50S ribosomal protein L10e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.255e-17
Identity = 48/151 (31.79%), Postives = 81/151 (53.64%), Query Frame = -2
Query:  316 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 768
            +  +  G+P  KI  +++G      D++P  + L   E+  +   +LE++R++ N+++ K  G+  + + +R  P  V+R NK  + AGADR+  GMR AFGKP GT AR+    ++ +  C    +   +EA RRA  K     +I V R
Sbjct:   19 RREYITGIPGSKIAQHNMGDLSAEPDDYPVQISLRVEEELQIRHGSLESSRLSANRHLIKELGEGNYKMTLRKFPHQVIRENKQATGAGADRVSDGMRQAFGKPVGTAARLNKDDIVFTAYCDVEQASVVKEAFRRAYNKLSPPCRITVDR 169          
The following BLAST results are available for this feature:
BLAST of CN186028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_SULTO1.291e-1838.9350S ribosomal protein L10e OS=Sulfolobus tokodaii ... [more]
RL10_SULIY2.203e-1837.5850S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIN2.203e-1837.5850S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIM2.203e-1837.5850S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIL2.203e-1837.5850S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIK2.203e-1837.5850S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIA2.203e-1837.5850S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_HALWD2.203e-1834.1950S ribosomal protein L10e OS=Haloquadratum walsby... [more]
RL10_SULSO3.758e-1836.9150S ribosomal protein L10e OS=Sulfolobus solfatari... [more]
RL10_HALLT9.255e-1731.7950S ribosomal protein L10e OS=Halorubrum lacusprof... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002E03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186028 ID=CN186028; Name=CN186028; organism=Citrus sinensis; type=EST; length=772bp
TTTTTTTTTTCACTTAACAACTGCAAGGATCACATAGTTAAACCAAAGAA
ACATGTCACTTCAACTTGAGAAATCCAGTTCAACTGAGAAAAGGTACGAA
ATGGAAAATAATAAACTAGACAGTAGACCCAGCTCTGCTATTTTGAGACA
GTAAATATCTTAGGTTGTTGCTTCCAGGAAAGCTCTTCCAGGTTGACGTT
GAGCCAAAGGACCATGACATCCGAGAAGCTTGGCATTCACACCATCTGGG
ACAATCCTGTTCTCCGACTTCCACCGCAGATAATCAGCACGGCTGAACTT
GGTAAATCCCCATTTCCTGCTGACAATAATCTTTTGACGACCAGGAAACT
TGAACTTAGCACGGCGAAGGGCCTCCTGAGCATGGTGGCTGTTACTATCC
TTGCAACGGACAGAAAGCAAGACCTGCCCGATAGCAACACGAGCACAGGT
TCCTTGGGGCTTTCCAAAAGCACCCCTCATTCCAGTCTGGAGCCTATCAG
CCCCAGCACACGAAAGCATCTTGTTAATACGCAGAACATGGAAGGGGTGC
ACCCTCACTCGCAAATGGAAAGCATCCTTGCCGGCGTACTTGGCCATGTA
CTTGTTGCAAGCGATACGGGCAGCTTCCAAGGCCTCGCTCGACACGTTCT
CCTTCTCCCAACTGACGAGGTGAACGCAGAAGGGGAACTCGTCGACGCCT
TTCTTCTTCATCCCGACATCGTAGATTCTGATCTTGGGATCGGGGACACC
GCGGCAAAAGCGGGACTTTGGG
back to top