CN186023

Overview
NameCN186023
Unique NameCN186023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_XANCP (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris GN=lldD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.224e-32
Identity = 76/159 (47.80%), Postives = 98/159 (61.64%), Query Frame = -2 
Query:  259 GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 732
            G +ST   S TG  ++        D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + LALGA AVL+GR  VY LAA G+ GV  ++ +++ E  + M LTG
Sbjct:  205 GNISTYRGSPTGLQDYIGWLAANFDPSISWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAGGQAGVENLLTLIEREMRVAMILTG 363
[Close]
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_XANCB (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris (strain B100) GN=lldD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.224e-32
Identity = 76/159 (47.80%), Postives = 98/159 (61.64%), Query Frame = -2 
Query:  259 GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 732
            G +ST   S TG  ++        D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + LALGA AVL+GR  VY LAA G+ GV  ++ +++ E  + M LTG
Sbjct:  205 GNISTYRGSPTGLQDYIGWLAANFDPSISWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAGGQAGVENLLTLIEREMRVAMILTG 363
[Close]
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_XANC8 (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=lldD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.224e-32
Identity = 76/159 (47.80%), Postives = 98/159 (61.64%), Query Frame = -2 
Query:  259 GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 732
            G +ST   S TG  ++        D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + LALGA AVL+GR  VY LAA G+ GV  ++ +++ E  + M LTG
Sbjct:  205 GNISTYRGSPTGLQDYIGWLAANFDPSISWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAGGQAGVENLLTLIEREMRVAMILTG 363
[Close]
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_VIBCM (L-lactate dehydrogenase [cytochrome] OS=Vibrio cholerae serotype O1 (strain M66-2) GN=lldD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.224e-32
Identity = 67/135 (49.63%), Postives = 90/135 (66.67%), Query Frame = -2 
Query:  259 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 663
            D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   +T+ AL  +  AVKG + IL+D G+R G DV + LALGA   ++GR  +Y LAA+G  GV  ++++ + E  + M LTG
Sbjct:  229 DPSISWKDLEWIRDFWDGPMIIKGILDTEDAKDAVRFGADGIVVSNHGGRQLDGVLSTVQALPAIADAVKGDLKILVDSGIRTGLDVVRMLALGADCTMLGRSFIYALAAQGRAGVENLLDLYEKEMRVAMTLTG 363
[Close]
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_VIBCH (L-lactate dehydrogenase [cytochrome] OS=Vibrio cholerae GN=lldD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.224e-32
Identity = 67/135 (49.63%), Postives = 90/135 (66.67%), Query Frame = -2 
Query:  259 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 663
            D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   +T+ AL  +  AVKG + IL+D G+R G DV + LALGA   ++GR  +Y LAA+G  GV  ++++ + E  + M LTG
Sbjct:  229 DPSISWKDLEWIRDFWDGPMIIKGILDTEDAKDAVRFGADGIVVSNHGGRQLDGVLSTVQALPAIADAVKGDLKILVDSGIRTGLDVVRMLALGADCTMLGRSFIYALAAQGRAGVENLLDLYEKEMRVAMTLTG 363
[Close]
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_XANC5 (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=lldD PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.386e-31
Identity = 74/159 (46.54%), Postives = 97/159 (61.01%), Query Frame = -2 
Query:  259 GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 732
            G +S    S TG  ++        D S++WKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + LALGA AVL+GR  VY LAA G+ GV  ++ +++ E  + M LTG
Sbjct:  205 GNISAYRGSPTGLQDYIGWLGANFDPSIAWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAAGQAGVENLLTLIEKEMRVAMTLTG 363
[Close]
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_XANAC (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas axonopodis pv. citri GN=lldD PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.386e-31
Identity = 74/159 (46.54%), Postives = 97/159 (61.01%), Query Frame = -2 
Query:  259 GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 732
            G +S    S TG  ++        D S++WKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + LALGA AVL+GR  VY LAA G+ GV  ++ +++ E  + M LTG
Sbjct:  205 GNISAYRGSPTGLQDYIGWLGANFDPSIAWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAAGQAGVENLLTLIEKEMRVAMTLTG 363
[Close]
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_XANOR (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae GN=lldD PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.811e-31
Identity = 69/135 (51.11%), Postives = 89/135 (65.93%), Query Frame = -2 
Query:  259 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 663
            D S++WKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + LALGA AVL+GR  VY LAA G+ GV  ++ +++ E  + M LTG
Sbjct:  229 DPSIAWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAADGQAGVENLLTLIEKEMRVAMTLTG 363
[Close]
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_XANOP (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=lldD PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.811e-31
Identity = 69/135 (51.11%), Postives = 89/135 (65.93%), Query Frame = -2 
Query:  259 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 663
            D S++WKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + LALGA AVL+GR  VY LAA G+ GV  ++ +++ E  + M LTG
Sbjct:  229 DPSIAWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAADGQAGVENLLTLIEKEMRVAMTLTG 363
[Close]
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_XANOM (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=lldD PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.811e-31
Identity = 69/135 (51.11%), Postives = 89/135 (65.93%), Query Frame = -2 
Query:  259 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 663
            D S++WKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + LALGA AVL+GR  VY LAA G+ GV  ++ +++ E  + M LTG
Sbjct:  229 DPSIAWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAADGQAGVENLLTLIEKEMRVAMTLTG 363
The following BLAST results are available for this feature:
BLAST of CN186023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_XANCP6.224e-3247.80L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANCB6.224e-3247.80L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANC86.224e-3247.80L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_VIBCM6.224e-3249.63L-lactate dehydrogenase [cytochrome] OS=Vibrio cho... [more]
LLDD_VIBCH6.224e-3249.63L-lactate dehydrogenase [cytochrome] OS=Vibrio cho... [more]
LLDD_XANC51.386e-3146.54L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANAC1.386e-3146.54L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANOR1.811e-3151.11L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANOP1.811e-3151.11L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANOM1.811e-3151.11L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186023 ID=CN186023; Name=CN186023; organism=Citrus sinensis; type=EST; length=790bp
TTTTTTTTTTTTTTTTTACCAAATGGTTGTATAATATCCCTTTTAGATTC
AATACCTAATACACATACAAANATAATACAAATACCACTTGTTATTAAAN
ATAATACACATACAACACTAATATATATAGAGTGGTGTCAAAACGCACCC
CTTAAACATTTCTTGCAACACCAATAATATTTACACGCATCGAATGGGAT
TCTCTCCTCGCTCAGGTTCTCACATGTCTTCCTGGTAATATGTTTCACAC
CTAGGACAGCCAGTAAGGGCCATGGTCAACTCAAACTCATCCTTCAGCAT
TTCGATGACGCGTCTCACCCCATATTCCCCTTTTGCAGCAAGGCCGTAGA
CTACAGGCCTTCCAATAAGTACAGCTTGTGCACCGAGGGCCAATGCCTTG
AAAACATCTGTTCCTCGCCGCACTCCTCCATCCATAAGAATTGGAACTCT
TCCTTTAACGGCATGAACCACCTCTTCCAGAGCAGAAATAGTGGCAGGAC
TATAATCTAACTGTCGAGCTCCGTGATTGGAGACAATAATCCCAGCAACA
CCTACTTCCACAGCTTTTATTGCATCTTCACGAGTAAGTATCCCCTTGAT
CAAAATTGGTAAGTTTGTAATAGATCTTAGCCATTCTAAATCCTTCCAAC
TTAAAGAAGCATCCATGGTCTCGTTGGCATCAGCTTCAAAATTCGAACCT
GTATCAGAGCTGACTTTGGTTGATAAGAGGCCTTCCAAATTCTTCAACGG
CGGTGTAATCATTTTGTTCTTTATATCTGCCTCCCTTCTA
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