CN186014

Overview
NameCN186014
Unique NameCN186014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN186014 vs. ExPASy Swiss-Prot
Match: RL44_THEAC (50S ribosomal protein L44E OS=Thermoplasma acidophilum GN=rpl44e PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12
Identity = 40/92 (43.48%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:  100 VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI 375
            + +PK   TYC    C+KHT H V + +K K S    G+RR+ R  SGYGG  +P F  + K TK+I LRL C  C      P  R K FEI
Sbjct:    1 MKMPKKIMTYCPY--CKKHTSHSVERVRKRKASELKAGQRRFRRVTSGYGGFPRPKFEGREKPTKRIALRLVCDECHKAITPPGIRAKKFEI 90
[Close]
BLAST of CN186014 vs. ExPASy Swiss-Prot
Match: RL44_AERPE (50S ribosomal protein L44E OS=Aeropyrum pernix GN=rpl44e PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 36/73 (49.32%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:  109 PKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGC 327
            PK  +TYC    C  HT H+V QY+ GK    A G+RRY RKQ GYG Q +P   + AK TKK VL + C  C
Sbjct:    4 PKRIRTYCP--RCNTHTEHRVAQYRAGKRRAMALGERRYRRKQEGYGSQRRPEQKRFAKVTKKQVLVITCTVC 74
The following BLAST results are available for this feature:
BLAST of CN186014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL44_THEAC1.281e-1243.4850S ribosomal protein L44E OS=Thermoplasma acidoph... [more]
RL44_AERPE6.359e-1249.3250S ribosomal protein L44E OS=Aeropyrum pernix GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002D17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186014 ID=CN186014; Name=CN186014; organism=Citrus sinensis; type=EST; length=737bp
AGGCTCTTTTTTCAGAAACCGAGTCTCTAGTTACCCTTAGGCAGCATTTG
GAAGTTACGAAGAGCTCTCACCTCCTCGTCGCCGCCGCCGGCCATCATGG
TGAACGTTCCCAAGACTAAGAAGACCTACTGCAAGAGCAAGGAGTGCAGA
AAGCACACCTTGCACAAGGTGACACAGTACAAGAAGGGCAAGGACAGTCT
TGCTGCTCAAGGGAAGAGACGGTATGATCGTAAACAGTCTGGCTATGGTG
GTCAGACCAAGCCTGTCTTCCACAAGAAGGCTAAGACCACCAAGAAGATT
GTGCTGAGGCTCCAATGCCAGGGTTGCAAGCATGTGTCTCAACATCCCAT
CAAGAGGTGCAAGCACTTTGAAATTGGTGGAGACAAGAAGGGAAAGGGAA
CATCTCTTTTCTAAATGCCTTTATTTTTGTTTGTATGCTTTTTACTTTGC
TGCACTTGATGGAACTTTACCCAGTATGAGAATATTTGTTTTAGTTTTGT
TGGGTTAGTTTGATGCTGTTAATTTAAAACTTGAAGCGGTTGTTTCCCAC
GCCTCTCCCCCTCACCTCTCAGCCTCGCGTTTCTCCCTCTCCACACGACG
CAGAACTTCAGCTCAGCCCCTCTCAGTTTCTTCCTTGTGAGCATGTCTCT
CCCTCGTGTCAGCTTAGCCCCTCTCTTCCTCACGTGCACGGCCTCCTAGC
ACAGCCCCTCCCCTCAAGCACAGTGACGCCATCGTTA
back to top