CN185969

Overview
NameCN185969
Unique NameCN185969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_BACC2 (50S ribosomal protein L2 OS=Bacillus cereus (strain G9842) GN=rplB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.836e-34
Identity = 69/127 (54.33%), Postives = 94/127 (74.02%), Query Frame = 1
Query:  364 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRS 744
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRA+IG V N  H   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGRS
Sbjct:  114 MEVMSGPEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRASIGQVGNEQHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRS 239          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_BACWK (50S ribosomal protein L2 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.316e-34
Identity = 69/127 (54.33%), Postives = 94/127 (74.02%), Query Frame = 1
Query:  364 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRS 744
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRA+IG V N  H   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGRS
Sbjct:  114 MEVMSGPESDIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRASIGQVGNEQHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRS 239          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_NEOSM (50S ribosomal protein L2 OS=Neorickettsia sennetsu (strain Miyayama) GN=rplB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.077e-33
Identity = 70/120 (58.33%), Postives = 90/120 (75.00%), Query Frame = 1
Query:  403 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            G+CMPL  + +GT +HN+E+ PG GG+LVR+AG+SA+++     ++ LV LPSG ++LI + C ATIG VSN      KL KAG+SRWLGRRP VRGVAMNPVDHP GGGEG++ S G H
Sbjct:  132 GACMPLGKVPLGTTVHNVELKPGAGGQLVRSAGSSARVIARD-GNYTLVTLPSGEKRLILSTCHATIGAVSNADRKNTKLGKAGRSRWLGRRPSVRGVAMNPVDHPMGGGEGKT-SGGRH 249          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_MESSB (50S ribosomal protein L2 OS=Mesorhizobium sp. (strain BNC1) GN=rplB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.077e-33
Identity = 68/143 (47.55%), Postives = 96/143 (67.13%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P++    D+++     VD+    G+ MPLA M +GTI+HN+E+ PG+GG++ R+AG+ A+++        ++RL SG ++L+   C AT+G VSNP H    L KAG+ RWLG+RP  RGV MNPVDHPHGGGEGR+ S G H
Sbjct:  107 PQRLAAGDRVISSAQSVDVKP--GNAMPLAAMPVGTIVHNVELKPGKGGQIARSAGSYAQLVGRD-QGMAILRLNSGEQRLVSGTCMATVGAVSNPDHANVSLGKAGRKRWLGKRPHNRGVTMNPVDHPHGGGEGRT-SGGRH 245          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_DICT6 (50S ribosomal protein L2 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.077e-33
Identity = 72/124 (58.06%), Postives = 93/124 (75.00%), Query Frame = 1
Query:  373 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRS 744
            M+  +++ +IG+ +PL  +  GT+IHN+E+ PG+GG+LVRAAGT+A+IL +    +  VRLPSG  +L D  CRATIG VSN  H    L KAG+SRWLGRRP VRG AMNPVDHPHGGGEG++
Sbjct:  117 MSGENVDIKIGNNLPLKNIPDGTLIHNLELYPGRGGQLVRAAGTAAQILGKE-GKWAYVRLPSGEIRLFDLNCRATIGQVSNVDHQNVSLGKAGRSRWLGRRPHVRGSAMNPVDHPHGGGEGKA 239          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_MAGSM (50S ribosomal protein L2 OS=Magnetococcus sp. (strain MC-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.407e-33
Identity = 68/151 (45.03%), Postives = 102/151 (67.55%), Query Frame = 1
Query:  310 GDPSKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            G+ S    P++  V D ++      +++ + G+CMPL  M IGTIIHN+E+ PG+GG++ R+AG   +++ +    +  +++PSG  +L+   C AT+G VSNP +   K+ KAG++RW+G+RP VRGV MNPVDHPHGGGEGR+ S G H
Sbjct:   99 GEKSYILAPQRLQVGDTVVSAKTLDNVDVKPGNCMPLRVMPIGTIIHNVELKPGKGGQVARSAGNYIQLMGKE-GKYAQLKMPSGEMRLVLLECMATVGMVSNPDNSNTKIGKAGRTRWMGKRPSVRGVVMNPVDHPHGGGEGRT-SGGRH 247          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_DESPS (50S ribosomal protein L2 OS=Desulfotalea psychrophila GN=rplB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.838e-33
Identity = 75/143 (52.45%), Postives = 103/143 (72.03%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P+  +V DKI+   A  +++ Q G+C+PLA + +GTIIHNIE+  G+G ++VR+AGTSA+++ +    + LVRLPSG  +     CRA +G V N  + ++KL KAG+SRWLG+RP VRGVAMNPVDHP GGGEG+S S G H
Sbjct:  107 PEGVSVGDKIV---AGDNVDIQPGNCLPLANIPLGTIIHNIEMKIGKGAQIVRSAGTSAQLMAKE-GDYVLVRLPSGEVRKFHRLCRACVGQVGNREYESQKLGKAGRSRWLGKRPHVRGVAMNPVDHPMGGGEGKS-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_BRASB (50S ribosomal protein L2 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.838e-33
Identity = 75/143 (52.45%), Postives = 98/143 (68.53%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P++  V D I+    +VD+    G+ MPL  M +GTI+HNIEV  G+GG+L R+AGT A+I+      + +VRL SG ++L+  RCR TIG VSNP H    + KAG+ RW+GRRP  RGVAMNP+DHPHGGGEGR+ S G H
Sbjct:  107 PQRLAVGDTIVAGN-YVDVKP--GNVMPLGNMPVGTIVHNIEVKIGKGGQLARSAGTYAQIVGRD-QDYVIVRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRKRWMGRRPHNRGVAMNPIDHPHGGGEGRT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_THEPX (50S ribosomal protein L2 OS=Thermoanaerobacter sp. (strain X514) GN=rplB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.400e-33
Identity = 68/120 (56.67%), Postives = 92/120 (76.67%), Query Frame = 1
Query:  385 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRS 744
            +++ ++G+ +PL  + +GTIIHNIE+ PG+GG+LVRAAGT+A+++ +    +  VR+PSG  +LI   CRATIG VSN  H   K+ KAG+SRWLG RP VRG AMNPVDHPHGGGEG++
Sbjct:  121 NVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMAKE-GDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAGRSRWLGIRPTVRGSAMNPVDHPHGGGEGKA 239          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_THEP3 (50S ribosomal protein L2 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.400e-33
Identity = 68/120 (56.67%), Postives = 92/120 (76.67%), Query Frame = 1
Query:  385 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRS 744
            +++ ++G+ +PL  + +GTIIHNIE+ PG+GG+LVRAAGT+A+++ +    +  VR+PSG  +LI   CRATIG VSN  H   K+ KAG+SRWLG RP VRG AMNPVDHPHGGGEG++
Sbjct:  121 NVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMAKE-GDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAGRSRWLGIRPTVRGSAMNPVDHPHGGGEGKA 239          
The following BLAST results are available for this feature:
BLAST of CN185969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BACC24.836e-3454.3350S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACWK6.316e-3454.3350S ribosomal protein L2 OS=Bacillus weihenstephan... [more]
RL2_NEOSM1.077e-3358.3350S ribosomal protein L2 OS=Neorickettsia sennetsu... [more]
RL2_MESSB1.077e-3347.5550S ribosomal protein L2 OS=Mesorhizobium sp. (str... [more]
RL2_DICT61.077e-3358.0650S ribosomal protein L2 OS=Dictyoglomus thermophi... [more]
RL2_MAGSM1.407e-3345.0350S ribosomal protein L2 OS=Magnetococcus sp. (str... [more]
RL2_DESPS1.838e-3352.4550S ribosomal protein L2 OS=Desulfotalea psychroph... [more]
RL2_BRASB1.838e-3352.4550S ribosomal protein L2 OS=Bradyrhizobium sp. (st... [more]
RL2_THEPX2.400e-3356.6750S ribosomal protein L2 OS=Thermoanaerobacter sp.... [more]
RL2_THEP32.400e-3356.6750S ribosomal protein L2 OS=Thermoanaerobacter pse... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002C13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185969 ID=CN185969; Name=CN185969; organism=Citrus sinensis; type=EST; length=763bp
GGAAAAACTCTCACGCTGGCCGTCACCTTTCTTCTCAGTGTGATCACCCA
TCTTTCAATTCCACAGCATTCTTTTCTCAGCCGTGGGGTGCTTTAGCTTC
TGTCACCGCCGGCAACATGTTGTGATAGACAGTGAAATCAACAGAAGAAA
ACAAAACGTAGGAGAAAGAGACACAGAAAGAGATCAGCAGAAATGGCTTT
GTGCAGAGTACGCTCAGCTTCATCGACGCTCTTCAACAGGCTTCTCTGTC
CTTCCGTTCTCAACAACAACACTACTTATCGCTATCAGTCCTCTGAAACC
GAATTAGTTGGTGATCCTTCAAAACAAGAAAAACCAAAAAAAGAAACTGT
GCGTGATAAGATAATGAGACAGATGGCTCATGTTGATATAAATTCTCAAA
TTGGAAGTTGCATGCCACTTGCTTGTATGCGTATTGGGACCATCATTCAC
AACATTGAGGTAAACCCAGGACAAGGTGGCAAGCTAGTTAGAGCTGCGGG
GACGTCAGCCAAGATTTTGAAAGAACCCACTTCAAGCTTCTGTTTAGTAA
GACTACCTTCTGGTAATGAGAAACTGATTGACACTAGATGTCGAGCCACC
ATTGGTACAGTGTCTAACCCAAGCCATGGAGCTAAGAAGCTTAGGAAGGC
TGGTCAGAGCCGTTGGTTGGGTCGAAGACCTGTGGTTAGAGGAGTAGCCA
TGAATCCAGTTGATCATCCTCATGGTGGAGGTGAGGGACGAAGCAAAAGT
AGTGGTAACCATG
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