CN185969

Overview
NameCN185969
Unique NameCN185969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RICRS (50S ribosomal protein L2 OS=Rickettsia rickettsii (strain Sheila Smith) GN=rplB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.400e-33
Identity = 69/143 (48.25%), Postives = 101/143 (70.63%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P+K +V D+++      D + +IG+C+PL C+ IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C+ATIG++SNP      L KAG++RWLG RP VRGVAMNPVDHPHGGGEG++ S G H
Sbjct:  107 PQKLSVGDRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGKD-SGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEGKT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RICRO (50S ribosomal protein L2 OS=Rickettsia rickettsii (strain Iowa) GN=rplB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.400e-33
Identity = 69/143 (48.25%), Postives = 101/143 (70.63%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P+K +V D+++      D + +IG+C+PL C+ IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C+ATIG++SNP      L KAG++RWLG RP VRGVAMNPVDHPHGGGEG++ S G H
Sbjct:  107 PQKLSVGDRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGKD-SGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEGKT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RICPU (50S ribosomal protein L2 OS=Rickettsia peacockii (strain Rustic) GN=rplB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.400e-33
Identity = 69/143 (48.25%), Postives = 101/143 (70.63%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P+K +V D+++      D + +IG+C+PL C+ IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C+ATIG++SNP      L KAG++RWLG RP VRGVAMNPVDHPHGGGEG++ S G H
Sbjct:  107 PQKLSVGDRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGKD-SGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEGKT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RICCN (50S ribosomal protein L2 OS=Rickettsia conorii GN=rplB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.400e-33
Identity = 69/143 (48.25%), Postives = 101/143 (70.63%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P+K +V D+++      D + +IG+C+PL C+ IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C+ATIG++SNP      L KAG++RWLG RP VRGVAMNPVDHPHGGGEG++ S G H
Sbjct:  107 PQKLSVGDRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGKD-SGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEGKT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RICAE (50S ribosomal protein L2 OS=Rickettsia africae (strain ESF-5) GN=rplB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.400e-33
Identity = 69/143 (48.25%), Postives = 101/143 (70.63%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P+K +V D+++      D + +IG+C+PL C+ IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C+ATIG++SNP      L KAG++RWLG RP VRGVAMNPVDHPHGGGEG++ S G H
Sbjct:  107 PQKLSVGDRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGKD-SGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEGKT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_METSB (50S ribosomal protein L2 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.400e-33
Identity = 74/151 (49.01%), Postives = 102/151 (67.55%), Query Frame = 1
Query:  310 GDPSKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            G+ S    P++ +V D+++      D+    G+ MPLA M +GTI+HNIE+  G+GG +VR+AGT A+++      + ++RL SG ++LI  +C AT+G VSNP H    + KAG+SRWLGRRP  RGV MNPVDHPHGGGEGR+ S G H
Sbjct:   99 GEQSYIIAPQRLSVGDEVVSSQ-QADVKP--GNAMPLASMPVGTIVHNIEMKIGKGGAMVRSAGTFAQVVGRD-QGYVIIRLNSGEQRLIHGQCFATVGAVSNPDHMNASIGKAGRSRWLGRRPHNRGVTMNPVDHPHGGGEGRT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_HYDS0 (50S ribosomal protein L2 OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=rplB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.400e-33
Identity = 71/120 (59.17%), Postives = 87/120 (72.50%), Query Frame = 1
Query:  403 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            G+ MPL  + +GT IHNIE+NPG+G KLVRAAG SA+++ +    +  VRLPSG  +LI+ +C ATIG V    H   KL KAG+SRWLG RP VRG AMNPVDHPHGGGEG++K  G H
Sbjct:  137 GNAMPLRFIPVGTFIHNIELNPGRGAKLVRAAGLSAQVIGK-IEGYAQVRLPSGEVRLINDKCMATIGVVGLAEHELVKLGKAGRSRWLGMRPNVRGTAMNPVDHPHGGGEGKTK--GKH 253          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_BRASO (50S ribosomal protein L2 OS=Bradyrhizobium sp. (strain ORS278) GN=rplB PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.094e-33
Identity = 74/143 (51.75%), Postives = 98/143 (68.53%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P++  V D I+    +VD+    G+ MPL  M +GTI+HNIEV  G+GG+L R+AGT A+++      + +VRL SG ++L+  RCR TIG VSNP H    + KAG+ RW+GRRP  RGVAMNP+DHPHGGGEGR+ S G H
Sbjct:  107 PQRLAVGDTIVAGN-YVDVKP--GNVMPLGNMPVGTIVHNIEVKIGKGGQLARSAGTYAQLVGRD-HDYVIVRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRKRWMGRRPHNRGVAMNPIDHPHGGGEGRT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_THETN (50S ribosomal protein L2 OS=Thermoanaerobacter tengcongensis GN=rplB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33
Identity = 65/120 (54.17%), Postives = 92/120 (76.67%), Query Frame = 1
Query:  385 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRS 744
            +++ ++G+ +PL  + +GTI+HNIE+ PG+GG+LVRAAG +A+++ +    +  +R+PSG  +LI+  CRATIG VSN  H   K+ KAG+SRWLG RP VRG AMNPVDHPHGGGEG++
Sbjct:  121 NVDIKVGNALPLRNIPVGTIVHNIELIPGKGGQLVRAAGAAAQLMAKE-GDYVHIRMPSGEIRLINANCRATIGQVSNIDHENVKIGKAGRSRWLGIRPTVRGSAMNPVDHPHGGGEGKA 239          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_CARHZ (50S ribosomal protein L2 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33
Identity = 67/124 (54.03%), Postives = 92/124 (74.19%), Query Frame = 1
Query:  373 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRS 744
            M+  D + ++G+ +PLA + +GT++HNIE+ PG+GG+LVRAAGT+A++L +    + ++RLPSG  + +   CRATIG V N  H    + KAG++RWLG RP VRGV MNPVDHPHGGGEGRS
Sbjct:  117 MSGPDADIKVGNALPLANIPVGTLVHNIELYPGKGGQLVRAAGTAAQLLGKE-GRYAILRLPSGEMRKVLLECRATIGQVGNLEHENITIGKAGRARWLGIRPTVRGVVMNPVDHPHGGGEGRS 239          
The following BLAST results are available for this feature:
BLAST of CN185969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_RICRS2.400e-3348.2550S ribosomal protein L2 OS=Rickettsia rickettsii ... [more]
RL2_RICRO2.400e-3348.2550S ribosomal protein L2 OS=Rickettsia rickettsii ... [more]
RL2_RICPU2.400e-3348.2550S ribosomal protein L2 OS=Rickettsia peacockii (... [more]
RL2_RICCN2.400e-3348.2550S ribosomal protein L2 OS=Rickettsia conorii GN=... [more]
RL2_RICAE2.400e-3348.2550S ribosomal protein L2 OS=Rickettsia africae (st... [more]
RL2_METSB2.400e-3349.0150S ribosomal protein L2 OS=Methylocella silvestri... [more]
RL2_HYDS02.400e-3359.1750S ribosomal protein L2 OS=Hydrogenobaculum sp. (... [more]
RL2_BRASO4.094e-3351.7550S ribosomal protein L2 OS=Bradyrhizobium sp. (st... [more]
RL2_THETN6.984e-3354.1750S ribosomal protein L2 OS=Thermoanaerobacter ten... [more]
RL2_CARHZ6.984e-3354.0350S ribosomal protein L2 OS=Carboxydothermus hydro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002C13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185969 ID=CN185969; Name=CN185969; organism=Citrus sinensis; type=EST; length=763bp
GGAAAAACTCTCACGCTGGCCGTCACCTTTCTTCTCAGTGTGATCACCCA
TCTTTCAATTCCACAGCATTCTTTTCTCAGCCGTGGGGTGCTTTAGCTTC
TGTCACCGCCGGCAACATGTTGTGATAGACAGTGAAATCAACAGAAGAAA
ACAAAACGTAGGAGAAAGAGACACAGAAAGAGATCAGCAGAAATGGCTTT
GTGCAGAGTACGCTCAGCTTCATCGACGCTCTTCAACAGGCTTCTCTGTC
CTTCCGTTCTCAACAACAACACTACTTATCGCTATCAGTCCTCTGAAACC
GAATTAGTTGGTGATCCTTCAAAACAAGAAAAACCAAAAAAAGAAACTGT
GCGTGATAAGATAATGAGACAGATGGCTCATGTTGATATAAATTCTCAAA
TTGGAAGTTGCATGCCACTTGCTTGTATGCGTATTGGGACCATCATTCAC
AACATTGAGGTAAACCCAGGACAAGGTGGCAAGCTAGTTAGAGCTGCGGG
GACGTCAGCCAAGATTTTGAAAGAACCCACTTCAAGCTTCTGTTTAGTAA
GACTACCTTCTGGTAATGAGAAACTGATTGACACTAGATGTCGAGCCACC
ATTGGTACAGTGTCTAACCCAAGCCATGGAGCTAAGAAGCTTAGGAAGGC
TGGTCAGAGCCGTTGGTTGGGTCGAAGACCTGTGGTTAGAGGAGTAGCCA
TGAATCCAGTTGATCATCCTCATGGTGGAGGTGAGGGACGAAGCAAAAGT
AGTGGTAACCATG
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