CN185969

Overview
NameCN185969
Unique NameCN185969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_BARBK (50S ribosomal protein L2 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplB1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.032e-32
Identity = 68/143 (47.55%), Postives = 98/143 (68.53%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P++  V D ++   A + ++ + G+ MPL  M +G I+HN+E+ PG+GG++ R+AG  A+++        ++RL SG ++L+ + C AT+G VSNP HG     KAG+SRW G+RP VRGVAMNPVDHPHGGGEGR+ S G H
Sbjct:  107 PQRLDVGDTVV---AGLSVDVKPGNAMPLGNMPVGAIVHNVEMKPGKGGQIARSAGAYAQLVGRD-QGMAILRLNSGEQRLVSSNCFATVGAVSNPDHGNINDGKAGRSRWRGKRPHVRGVAMNPVDHPHGGGEGRT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_STRSY (50S ribosomal protein L2 OS=Streptococcus suis (strain 05ZYH33) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.654e-32
Identity = 65/116 (56.03%), Postives = 86/116 (74.14%), Query Frame = 1
Query:  397 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRS 744
            ++G+ +PLA + +GT++HNIE+ PG+GG+LVRAAG SA++L +    + LVRL SG  ++I   CRAT+GTV N  HG   L KAG+SRW G RP VRG  MNP DHPHGGGEG++
Sbjct:  125 KVGNALPLANIPVGTVVHNIELKPGRGGELVRAAGASAQVLGQE-GKYVLVRLQSGEVRMILGTCRATVGTVGNEQHGLVNLGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGKA 239          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_STRS2 (50S ribosomal protein L2 OS=Streptococcus suis (strain 98HAH33) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.654e-32
Identity = 65/116 (56.03%), Postives = 86/116 (74.14%), Query Frame = 1
Query:  397 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRS 744
            ++G+ +PLA + +GT++HNIE+ PG+GG+LVRAAG SA++L +    + LVRL SG  ++I   CRAT+GTV N  HG   L KAG+SRW G RP VRG  MNP DHPHGGGEG++
Sbjct:  125 KVGNALPLANIPVGTVVHNIELKPGRGGELVRAAGASAQVLGQE-GKYVLVRLQSGEVRMILGTCRATVGTVGNEQHGLVNLGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGKA 239          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RHORT (50S ribosomal protein L2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.654e-32
Identity = 67/120 (55.83%), Postives = 89/120 (74.17%), Query Frame = 1
Query:  403 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            G+ MPL  M +GTIIHN+E+ PG+GG+L R+AG  A+++ +  + +  +RL SG  +L+   C AT+G VSNP +  +KL KAG+SRW+GRRP VRGV MNPVDHPHGGGEGR+ S G H
Sbjct:  127 GNAMPLKNMPVGTIIHNVEMKPGKGGQLARSAGCYAQLIGKD-AGYAQLRLSSGELRLVRGECLATVGAVSNPDNQNEKLGKAGRSRWMGRRPHVRGVVMNPVDHPHGGGEGRT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RHOPS (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.654e-32
Identity = 71/143 (49.65%), Postives = 99/143 (69.23%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P++ +V D ++   ++VD+    G+ MPL  M +GTI+HNIE+  G+GG++ R+AGT A+++      + +VRL SG ++L+  RC ATIG VSNP H    + KAG+ RWLGRRP  RGV MNP+DHPHGGGEGR+ S G H
Sbjct:  107 PQRLSVGDSVIAG-SYVDVKP--GNVMPLGNMPVGTIVHNIELKIGKGGQIARSAGTYAQLVGRD-HDYVIVRLNSGEQRLVHGRCTATIGAVSNPDHMNISIGKAGRKRWLGRRPHNRGVVMNPIDHPHGGGEGRT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_PARUW (50S ribosomal protein L2 OS=Protochlamydia amoebophila (strain UWE25) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.654e-32
Identity = 64/118 (54.24%), Postives = 84/118 (71.19%), Query Frame = 1
Query:  400 IGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSS 753
            IG CM L  M +G++IHNIE+ PG+GGKLVR+AG SA+++   +  +  +R+PSG  ++I+  CRAT G VSNP    +   KAG+ RW G RP VRG AMNPVDHPHGGGEG+ K +
Sbjct:  133 IGCCMKLRLMPLGSVIHNIELYPGKGGKLVRSAGLSAQLMAR-SGGYATIRMPSGEVRMINENCRATFGAVSNPERNLRVEGKAGRMRWKGIRPTVRGTAMNPVDHPHGGGEGKHKGN 249          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_PARL1 (50S ribosomal protein L2 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.654e-32
Identity = 63/120 (52.50%), Postives = 88/120 (73.33%), Query Frame = 1
Query:  403 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            G+ MPLA + +GTI+HN+E+ PG+GG++ R+AGT  +++      + L+RL SG ++++   C A+IG VSNP H    + KAG++RWLG+RP VRGV MNPVDHPHGGGEGR+ S G H
Sbjct:  127 GNAMPLANIPVGTIVHNVEMKPGKGGQIARSAGTYVQLVGRD-QGYALLRLSSGEQRMVPATCMASIGAVSNPDHSNITIAKAGRNRWLGKRPHVRGVVMNPVDHPHGGGEGRT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_BARQU (50S ribosomal protein L2 OS=Bartonella quintana GN=rplB PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.654e-32
Identity = 71/143 (49.65%), Postives = 98/143 (68.53%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P++  V D I+   A  +++ + G+ MPL  M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C AT+G VSNP H      KAG+SRW G+RP VRGVAMNPVDHPHGGGEGR+ S G H
Sbjct:  107 PQRLDVGDSII---AGSNVDVKPGNAMPLGNMPVGTIIHNVEMKPGKGGQIARSAGTYAQLVGRG-QGMVILRLNSGEQRLVSGSCFATVGAVSNPDHANINDGKAGRSRWRGKRPHVRGVAMNPVDHPHGGGEGRT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_PELUB (50S ribosomal protein L2 OS=Pelagibacter ubique GN=rplB PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.466e-32
Identity = 70/143 (48.95%), Postives = 95/143 (66.43%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P+K  V DK+       +   ++G+CMPL  + +G  IHN+E+ PG GGK+ R+AGTS  I      ++ L+++ SG  + ID+RC ATIG +SNP     K+ KAG+SRWLGRRP  RGV MNPVDHPHGGGEG++ + G H
Sbjct:  108 PQKIKVGDKVENGS---EKEIKVGNCMPLRDIPVGINIHNVELKPGAGGKIARSAGTSVTI-SGLDGNYSLIKMTSGEVRKIDSRCMATIGVLSNPDQKNIKIGKAGRSRWLGRRPHTRGVVMNPVDHPHGGGEGKT-AGGRH 245          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_SULSY (50S ribosomal protein L2 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=rplB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.527e-32
Identity = 67/124 (54.03%), Postives = 87/124 (70.16%), Query Frame = 1
Query:  373 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRS 744
            MA  D   ++G+ +PL  + +GT++HNIE+ PG+GG+LVRAAG SA+IL      +  +RLPSG  +L+  +C ATIG V    H   +L KAG+SRWLG RP VRG AMNP DHPHGGGEGR+
Sbjct:  117 MAGPDAEIKVGNALPLENIPVGTLVHNIELTPGKGGQLVRAAGMSAQILGRE-GDYVQIRLPSGELRLVYKKCMATIGAVGLAEHELLELGKAGRSRWLGIRPTVRGTAMNPADHPHGGGEGRT 239          
The following BLAST results are available for this feature:
BLAST of CN185969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BARBK2.032e-3247.5550S ribosomal protein L2 OS=Bartonella bacilliform... [more]
RL2_STRSY2.654e-3256.0350S ribosomal protein L2 OS=Streptococcus suis (st... [more]
RL2_STRS22.654e-3256.0350S ribosomal protein L2 OS=Streptococcus suis (st... [more]
RL2_RHORT2.654e-3255.8350S ribosomal protein L2 OS=Rhodospirillum rubrum ... [more]
RL2_RHOPS2.654e-3249.6550S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_PARUW2.654e-3254.2450S ribosomal protein L2 OS=Protochlamydia amoebop... [more]
RL2_PARL12.654e-3252.5050S ribosomal protein L2 OS=Parvibaculum lavamenti... [more]
RL2_BARQU2.654e-3249.6550S ribosomal protein L2 OS=Bartonella quintana GN... [more]
RL2_PELUB3.466e-3248.9550S ribosomal protein L2 OS=Pelagibacter ubique GN... [more]
RL2_SULSY4.527e-3254.0350S ribosomal protein L2 OS=Sulfurihydrogenibium s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002C13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185969 ID=CN185969; Name=CN185969; organism=Citrus sinensis; type=EST; length=763bp
GGAAAAACTCTCACGCTGGCCGTCACCTTTCTTCTCAGTGTGATCACCCA
TCTTTCAATTCCACAGCATTCTTTTCTCAGCCGTGGGGTGCTTTAGCTTC
TGTCACCGCCGGCAACATGTTGTGATAGACAGTGAAATCAACAGAAGAAA
ACAAAACGTAGGAGAAAGAGACACAGAAAGAGATCAGCAGAAATGGCTTT
GTGCAGAGTACGCTCAGCTTCATCGACGCTCTTCAACAGGCTTCTCTGTC
CTTCCGTTCTCAACAACAACACTACTTATCGCTATCAGTCCTCTGAAACC
GAATTAGTTGGTGATCCTTCAAAACAAGAAAAACCAAAAAAAGAAACTGT
GCGTGATAAGATAATGAGACAGATGGCTCATGTTGATATAAATTCTCAAA
TTGGAAGTTGCATGCCACTTGCTTGTATGCGTATTGGGACCATCATTCAC
AACATTGAGGTAAACCCAGGACAAGGTGGCAAGCTAGTTAGAGCTGCGGG
GACGTCAGCCAAGATTTTGAAAGAACCCACTTCAAGCTTCTGTTTAGTAA
GACTACCTTCTGGTAATGAGAAACTGATTGACACTAGATGTCGAGCCACC
ATTGGTACAGTGTCTAACCCAAGCCATGGAGCTAAGAAGCTTAGGAAGGC
TGGTCAGAGCCGTTGGTTGGGTCGAAGACCTGTGGTTAGAGGAGTAGCCA
TGAATCCAGTTGATCATCCTCATGGTGGAGGTGAGGGACGAAGCAAAAGT
AGTGGTAACCATG
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