CN185943

Overview
NameCN185943
Unique NameCN185943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5_RAT (Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.651e-18
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = -3
Query:  440 SEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP 694
            +EQ   D K +  EE+  H  +K  W+I+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGHS  ARE+   Y IG++ P
Sbjct:    2 AEQSDKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGELHP 86          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5_HORSE (Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 4.651e-18
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = -3
Query:  440 SEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP 694
            +EQ     K +  EE+  HN +K  WLI+  KVYD++ F++DHPGG+EVL    G DAT +FED+GHS  ARE+   + IG++ P
Sbjct:    2 AEQSDKAVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEDHPGGEEVLREQAGGDATENFEDIGHSTDARELSKTFIIGELHP 86          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5_RABIT (Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 91.2781 bits (225), Expect = 6.074e-18
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = -3
Query:  440 QMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP 688
            Q   D K +  EE+  HN +K  WLI+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGHS  ARE+   + IG++ P
Sbjct:    4 QSDKDVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHP 86          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB52_SCHPO (Probable cytochrome b5 2 OS=Schizosaccharomyces pombe GN=SPCC16A11.10c PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.074e-18
Identity = 36/70 (51.43%), Postives = 54/70 (77.14%), Query Frame = -3
Query:  446 EEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 655
            EEV  HN   D ++++  KVYD+S F+D HPGG+EVL+   G+DA+  FEDVGHS+ A+E+++K+YIG++
Sbjct:    9 EEVLKHNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVGHSEDAQELLEKFYIGNL 78          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5_PIG (Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 7.933e-18
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = -3
Query:  440 SEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP 694
            +EQ     K +  EE+  HN +K  WLI+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGHS  ARE+   + IG++ P
Sbjct:    2 AEQSDKAVKYYTLEEIQKHNNSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHP 86          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5_BOVIN (Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 1.036e-17
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = -3
Query:  440 SEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP 694
            +E+ +   K +  EE+  HN +K  WLI+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGHS  ARE+   + IG++ P
Sbjct:    2 AEESSKAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHP 86          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5_MOUSE (Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.308e-17
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = -3
Query:  440 QMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP 688
            Q   D K +  EE+  H  +K  W+I+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGHS  ARE+   Y IG++ P
Sbjct:    4 QSDKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGELHP 86          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5_CHICK (Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 88.9669 bits (219), Expect = 3.014e-17
Identity = 35/82 (42.68%), Postives = 56/82 (68.29%), Query Frame = -3
Query:  425 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPR 670
            + ++ EEV  HN ++  W+I+  ++YD++ F+D+HPGG+EVL    G DAT +FEDVGHS  AR + + + IG++ P   P+
Sbjct:   15 RYYRLEEVQKHNNSQSTWIIVHHRIYDITKFLDEHPGGEEVLREQAGGDATENFEDVGHSTDARALSETFIIGELHPDDRPK 96          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: NIA_VOLCA (Nitrate reductase [NADH] OS=Volvox carteri GN=NITA PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.937e-17
Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = -3
Query:  395 PKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQP 673
            P+ +  EEVA HN  + CW +  GKVYD + ++D+HPGG E ++   G DAT++F  + HS  A+ M+ +YYIGD+  S      A +P  QP
Sbjct:  497 PRQYTMEEVAAHNTEESCWFVHGGKVYDATPYLDEHPGGAESILIVAGADATDEFNSI-HSSKAKAMLAQYYIGDLVASKPAAAGATVPEPQP 588          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5_NEUCR (Probable cytochrome b5 OS=Neurospora crassa GN=B23L21.190 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.142e-17
Identity = 38/85 (44.71%), Postives = 60/85 (70.59%), Query Frame = -3
Query:  407 FEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDID-PSTVPRKRAYIP 658
            +++VA HN  KD +++I  KVYD++ F+D+HPGG+EVL+   G+D+T  FEDVGHSD ARE ++   +G +   +  P+ +A +P
Sbjct:    7 YQDVAEHNTKKDLYVVIHDKVYDITKFVDEHPGGEEVLLDVAGQDSTEAFEDVGHSDEAREALEPLLVGTLKRQAGDPKPKAPLP 91          
The following BLAST results are available for this feature:
BLAST of CN185943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CYB5_RAT4.651e-1847.06Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 S... [more]
CYB5_HORSE4.651e-1847.06Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3[more]
CYB5_RABIT6.074e-1848.19Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE... [more]
CYB52_SCHPO6.074e-1851.43Probable cytochrome b5 2 OS=Schizosaccharomyces po... [more]
CYB5_PIG7.933e-1847.06Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3[more]
CYB5_BOVIN1.036e-1745.88Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3[more]
CYB5_MOUSE2.308e-1746.99Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2[more]
CYB5_CHICK3.014e-1742.68Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4[more]
NIA_VOLCA3.937e-1741.94Nitrate reductase [NADH] OS=Volvox carteri GN=NITA... [more]
CYB5_NEUCR5.142e-1744.71Probable cytochrome b5 OS=Neurospora crassa GN=B23... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002B20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185943 ID=CN185943; Name=CN185943; organism=Citrus sinensis; type=EST; length=747bp
TTTTTTTTTTTTTTTTTGAAGGAATAACTTGCCCTTGCTTTCCATCCCAT
TATGCAATAAAAGTAAACATTATCCCATGACCATCAATCCAAAACATTAG
AAACAAGACACTCAAGAGAAGACAGACAATATGGTCTCTGGTGGACTACG
AACCACTATTCAATTTCAGCAAAACCAAACACCATAGGAAAGTAAATAAA
AGATAAATGTCCTAGAACTAAGCTCATGCAAATCACCAGCTTCCCATTCC
GGAGATGACTCATTTTATTGATATTGTGACCTACTCTTTCTTGGTATAGT
GTCTGACCGCAAAGGCTAAACCCAATATCAAGAGCGGCACAAGAATCTGT
AGAATCTTAATAATGAACTCAGGGGTCTTGTCTTGATTGTAAGCAGGTTG
CTGCGGTGGAATATATGCACGTTTCCGAGGAACAGTTGAGGGATCAATGT
CACCAATATAGTACTTGTCCATCATCTCCCTAGCGGAGTCACTGTGACCC
ACATCTTCAAAGTCATTTGTTGCATCTTTCCCAGTTGCAGAAATCAAAAC
CTCATCTCCTCCAGGGTGATCATCCATGAACGAGGACACATCATACACCT
TGCCAGAAATAATAAGCCAGCAATCCTTAGTTTTGTTGTGCGTGGCGACC
TCTTCGAACTGGTGAATCTTTGGATCTGAGGCCATTTGTTCGCTACTGCA
GACGAGAGAGACAGAGAGGAGAGCAAAAGAATTTGGGCTCTCTCCCT
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