CN185922

Overview
NameCN185922
Unique NameCN185922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185922 vs. ExPASy Swiss-Prot
Match: UCHL1_MOUSE (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Mus musculus GN=Uchl1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.389e-14
Identity = 39/119 (32.77%), Postives = 58/119 (48.74%), Query Frame = 3
Query:   15 EIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFSKKA 371
            +++F+D S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDG    P++HG            KV +   ++    + F+ +A  K A
Sbjct:  105 KLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDSVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDSLLQDAAKVCREFTEREQGEVRFSAVALCKAA 223          
BLAST of CN185922 vs. ExPASy Swiss-Prot
Match: UCHL1_MACFA (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Macaca fascicularis GN=UCHL1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.550e-14
Identity = 38/119 (31.93%), Postives = 57/119 (47.90%), Query Frame = 3
Query:   15 EIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFSKKA 371
            ++ F+D S   +F   T  + P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDG    P++HG            KV +   ++    + F+ +A  K A
Sbjct:  105 KLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEGTLLQDAAKVCREFTEREQGEVRFSAVALCKAA 223          
BLAST of CN185922 vs. ExPASy Swiss-Prot
Match: UCHL1_HUMAN (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Homo sapiens GN=UCHL1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.550e-14
Identity = 38/119 (31.93%), Postives = 57/119 (47.90%), Query Frame = 3
Query:   15 EIKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFSKKA 371
            ++ F+D S   +F   T  + P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDG    P++HG            KV +   ++    + F+ +A  K A
Sbjct:  105 KLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA 223          
BLAST of CN185922 vs. ExPASy Swiss-Prot
Match: UCHL_DICDI (Probable ubiquitin carboxyl-terminal hydrolase OS=Dictyostelium discoideum GN=uch1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 41/120 (34.17%), Postives = 64/120 (53.33%), Query Frame = 3
Query:   18 IKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDD---VNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFSKK 368
            I+F ++ FF +F   T +L  +ERA  L  + E+E +H ++A  G +    +   V  HF+ F  VDG LYELDG K   I+HG             V++ MI ++P+ + FN++   KK
Sbjct:  119 IEFNENGFFKQFLDKTTSLSTEERAISLLKNSEIEKSHEISALQGQSNVPQEDEPVVLHFVSFVHVDGHLYELDGRKPFAINHGESSAETLLKDTANVLQKMIDEDPKEIRFNLMGLVKK 238          
BLAST of CN185922 vs. ExPASy Swiss-Prot
Match: UCHL_DROME (Ubiquitin carboxyl-terminal hydrolase OS=Drosophila melanogaster GN=Uch PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 40/113 (35.40%), Postives = 53/113 (46.90%), Query Frame = 3
Query:   30 DDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEAT--DDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFS 362
            D      F + TA+L P+ER   LE D++    H   A  G T A   + V  HFI     +G LYELDG KS PI HG            KV K  + ++P  + F V+A +
Sbjct:  111 DRGVLKDFLEKTASLSPEERGRALEKDEKFTADHEALAQEGQTNAANHEKVIHHFIALVNKEGTLYELDGRKSFPIKHGPTSEETFVKDAAKVCKEFMARDPNEVRFTVLALT 223          
BLAST of CN185922 vs. ExPASy Swiss-Prot
Match: UCHL_APLCA (Ubiquitin carboxyl-terminal hydrolase OS=Aplysia californica GN=UCH PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 39/108 (36.11%), Postives = 52/108 (48.15%), Query Frame = 3
Query:   18 IKFQDDSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEAT---DDVNDHFICFTCVDGELYELDGGKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPE 332
            I F     F  F + T  L+P+ERA  LE D  M  AH   A  GDT+A    + V  HF+     +G LYELDG K  P+ HG            +V+K  + ++PE
Sbjct:  106 IPFDAAKHFKTFLEKTKPLNPEERAKHLEQDNLMGAAHGDCAQEGDTQAPSQDEHVKSHFVALVHCNGTLYELDGRKEAPVVHGTTSADTFLEDAAEVVKKFMARDPE 213          
The following BLAST results are available for this feature:
BLAST of CN185922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UCHL1_MOUSE3.389e-1432.77Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_MACFA7.550e-1431.93Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_HUMAN7.550e-1431.93Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL_DICDI9.860e-1434.17Probable ubiquitin carboxyl-terminal hydrolase OS=... [more]
UCHL_DROME7.066e-1235.40Ubiquitin carboxyl-terminal hydrolase OS=Drosophil... [more]
UCHL_APLCA7.066e-1236.11Ubiquitin carboxyl-terminal hydrolase OS=Aplysia c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002B04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185922 ID=CN185922; Name=CN185922; organism=Citrus sinensis; type=EST; length=674bp
GCAGGGTCACTTCGGAAATCAAGTTTCAAGATGATTCATTCTTCGATAAA
TTTTACAAGTCCACAGCGAACTTGGATCCACAAGAGCGTGCAGCATTTCT
TGAGAATGATAAGGAAATGGAAGTTGCTCATTCGGTAGCAGCTTCAGCTG
GTGACACAGAGGCTACCGATGACGTGAATGATCATTTTATCTGCTTCACC
TGTGTGGATGGGGAACTTTATGAACTTGATGGAGGGAAGTCGGGGCCAAT
ATCCCATGGTGCTTCGTCTCCAAGCAGCTTATTGCTGGATGCAGCTAAAG
TGATAAAGGGCATGATCCAGAAAAATCCTGAATCACTGAACTTCAATGTA
ATTGCCTTTTCGAAGAAAGCTTGAGGTGCATTTTAATGTTGAGAATCTGA
GCTTATTCAGTTCCTGCAAATGATAAAGCTTCTTACTGCAGTTTTCAGTT
TGTGCACATCCACATATGCGCAAACAAACTAGTTCAGTGATGGTTGTAGG
TCGACTTAGGTGGCTTTACTTTCAGATGGTACAGCATGTTAATTCTGGTT
GCTGTGTTTCAGTTTTAGAGCAGATTCATTTTACACCTTGGGAGTGCCAG
CATGACTCTTAGCCCTACAATGCATGTTATGCTACATTTTCTGCTGATGT
TAAATTTAAATGGGTGAACAAATT
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