CN185908

Overview
NameCN185908
Unique NameCN185908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_MOOTA (Ketol-acid reductoisomerase OS=Moorella thermoacetica (strain ATCC 39073) GN=ilvC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 39/118 (33.05%), Postives = 65/118 (55.08%), Query Frame = 3
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 476
            P ++ VI V PKG G  VRR YV+G+     G+ +  A++QD  G+A  + L ++  +G+       TT ++E  +D+FGE+ +L G    +V++ F    E G   ++AY    EC+
Sbjct:  120 PADVDVIMVAPKGPGHLVRRTYVEGQ-----GVPALIAIYQDASGKAKEIGLAYAKGIGATRAGVIETTFKEETETDLFGEQAVLCGGTTALVKAGFETLVEAGYQPEIAY---FECL 229          
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_LYSSC (Ketol-acid reductoisomerase OS=Lysinibacillus sphaericus (strain C3-41) GN=ilvC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 40/115 (34.78%), Postives = 63/115 (54.78%), Query Frame = 3
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTV 467
            P ++ V  V PKG G  VRR + +G     AG+   FA+HQD  G+A ++AL +   +G+       TT ++E  +D+FGE+ +L G    +V++ F    E G   +LAY  T+
Sbjct:  119 PADVDVFLVAPKGPGHLVRRQFQEG-----AGVPGLFAIHQDATGQAKDLALAYGKGIGAARGGLLETTFKEETETDLFGEQAVLCGGATQLVKAGFETLVEAGYQPELAYFETL 228          
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_HYDS0 (Ketol-acid reductoisomerase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=ilvC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 57/220 (25.91%), Postives = 98/220 (44.55%), Query Frame = 3
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVL---AGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 767
            PK+I V  V PKG G  VR +Y +GK     G+ +  ++HQD  G   ++AL ++  +G+       TT  +E  +D+FGE+ +L G    ++++ F    E G   ++AY    EC+    +I  +I   G+  +  S S   K          Y     ++ +  +++  G   R  +L   A R  Y         + K  +  + KVG+ +R   P
Sbjct:  120 PKDIDVFMVAPKGPGHLVRWMYEEGK-----GVPALISIHQDATGSCRDIALAYAKGIGATRAGVIETTFREETETDLFGEQAVLCGGATALIKAGFETLVEAGYQPEMAY---FECLHELKLIVDLIYQHGIAGMRYSISDTAKYGDVTRGDRVYEAVKPLMKQMLKEIQDGEFAREWILENQANRPVYNA------LLNKDKEHLVEKVGKELRQMMP 325          
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_DESVM (Ketol-acid reductoisomerase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=ilvC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 43/141 (30.50%), Postives = 73/141 (51.77%), Query Frame = 3
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGIISKIISTQGMLAVYNSFS 539
            PK++ V  + PKG G  VRR Y +G      G+    A+HQD  G+A   AL ++  +G   +    TT ++E  +D+FGE+ +L G +  ++++ F    E G   ++AY    EC+    +I  +I   G+  + +S S
Sbjct:  119 PKDVDVFMIAPKGPGHLVRRTYTEG-----GGVPCLVAIHQDATGKAMEKALAYAKGVGGARSGVIETTFKEETETDLFGEQAVLCGGLSSLIKAGFETLVEAGYQPEIAY---FECLHEVKLIVDLIYEGGLAKMRHSIS 251          
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_DESDA (Ketol-acid reductoisomerase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=ilvC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 59/222 (26.58%), Postives = 105/222 (47.30%), Query Frame = 3
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE---CYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQT--RMWKVGERVRSTRP 767
            PK++ V  + PKG G  VRR Y +G      G+    A+ QD  G+A  +AL ++  +G   +    TT  +E  +D+FGE+ +L G V  ++++ F    E G   ++AY    EC+    +I  ++   G+  +  S S  +  E+    +       E+  E     +D+ +G   R+ +L  R  Y     P F   + +++  ++ KVG+ +RS  P
Sbjct:  119 PKDVDVFLIAPKGPGHLVRRTYTEG-----GGVPCLVAIEQDATGKALQMALAYAKGVGGARSGVIETTFREETETDLFGEQAVLCGGVSALIKAGFETLVEAGYQPEMAY---FECLHEMKLIVDLMYEGGLSRMRYSIS--NTAEYGDYVTGPRLVTDEVKKEMKAVLKDIQSGVFARNFILEARAKY-----PMFLTTRRNESEHQIEKVGKELRSMMP 325          
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_CAMC5 (Ketol-acid reductoisomerase OS=Campylobacter curvus (strain 525.92) GN=ilvC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 3
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 476
            PKNI VI + PK  G +VR  +V+G      GI    AV QD  G+A  +AL ++ A+G   T    TT + E  +D+FGE+ +L G +  +V + F    E G   ++AY    EC+
Sbjct:  121 PKNIDVIMIAPKAPGHTVRSEFVRG-----GGIPDLIAVEQDASGQAKQIALSYASAIGGGRTGIIETTFKDETETDLFGEQAVLCGGLCALVNAGFETLVEAGYEPEMAY---FECL 230          
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_RHOFD (Ketol-acid reductoisomerase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=ilvC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.041e-12
Identity = 56/222 (25.23%), Postives = 100/222 (45.05%), Query Frame = 3
Query:  117 GLDFPK-NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL--GSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGK--IDQTRMWKVGERVRSTRP 767
            GL  P+ ++ V  V PK  G +VR  YVQG      G+    A+HQD  GR  ++AL +++A   G      TT  +E  +D+FGE+ +L G    ++++ F    E G   ++AY   +  +  I+  I         Y+  +  +  E+            + + +C +D+  G   +S +L       K G P     +    + ++ +VGE++R+  P
Sbjct:  114 GLVTPRADLDVWMVAPKAPGHTVRGTYVQG-----GGVPQLIAIHQDKSGRTRDLALSYAMANGGGKAGIIETTFREETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDMIYEGGIANMNYSISNNAEYGEYVTGPKIITSASKDAMRQCLKDIQTGEYAKSFILE-----NKAGAPTLLSRRRLTSEHQIEQVGEKLRAMMP 325          
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_DESVV (Ketol-acid reductoisomerase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=ilvC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.041e-12
Identity = 60/222 (27.03%), Postives = 100/222 (45.05%), Query Frame = 3
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEI---LYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGK--IDQTRMWKVGERVRSTRP 767
            PK++ V  + PKG G  VRR Y +G      G+    AVHQD  G+A   AL ++  +G   +    TT  +E  +D+FGE+ +L G +  ++++ F    E G   ++AY    EC+    +I  +I   G+  +  S S  D  E+    +       E    + +   D+  G+  R+ +L       K G P F   +    + ++ KVG  +R   P
Sbjct:  119 PKDVDVFMIAPKGPGHLVRRTYTEG-----GGVPCLVAVHQDATGKAMEKALAYAKGVGGSRSGVIETTFREETETDLFGEQAVLCGGLSSLIKAGFETLVEAGYQPEIAY---FECLHEVKLIVDLIYEGGLERMRYSIS--DTAEYGDYVTGKRIVTEETKKEMKKVLRDIQDGTFARNFILEA-----KAGYPGFKATRRLEAEHQIEKVGGELRGMMP 325          
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_DESVH (Ketol-acid reductoisomerase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=ilvC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.041e-12
Identity = 60/222 (27.03%), Postives = 100/222 (45.05%), Query Frame = 3
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEI---LYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGK--IDQTRMWKVGERVRSTRP 767
            PK++ V  + PKG G  VRR Y +G      G+    AVHQD  G+A   AL ++  +G   +    TT  +E  +D+FGE+ +L G +  ++++ F    E G   ++AY    EC+    +I  +I   G+  +  S S  D  E+    +       E    + +   D+  G+  R+ +L       K G P F   +    + ++ KVG  +R   P
Sbjct:  119 PKDVDVFMIAPKGPGHLVRRTYTEG-----GGVPCLVAVHQDATGKAMEKALAYAKGVGGSRSGVIETTFREETETDLFGEQAVLCGGLSSLIKAGFETLVEAGYQPEIAY---FECLHEVKLIVDLIYEGGLERMRYSIS--DTAEYGDYVTGKRIVTEETKKEMKKVLRDIQDGTFARNFILEA-----KAGYPGFKATRRLEAEHQIEKVGGELRGMMP 325          
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_CARHZ (Ketol-acid reductoisomerase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=ilvC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.041e-12
Identity = 40/118 (33.90%), Postives = 66/118 (55.93%), Query Frame = 3
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 476
            P ++ V  V PK  G  VRR+Y++GK     G+    AV+QD  G+A ++AL ++  +G      F TT ++E  +D+FGE+ +L G V  ++++ F    E G   ++AY    EC+
Sbjct:  120 PPDVDVFLVAPKSPGHLVRRMYLEGK-----GVPGLIAVYQDATGKAKDLALAYAKGIGCTRAGVFETTFKEETETDLFGEQAVLCGGVTHLIKAGFETLVEAGYAPEMAY---FECL 229          
The following BLAST results are available for this feature:
BLAST of CN185908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
ILVC_MOOTA3.094e-1233.05Ketol-acid reductoisomerase OS=Moorella thermoacet... [more]
ILVC_LYSSC3.094e-1234.78Ketol-acid reductoisomerase OS=Lysinibacillus spha... [more]
ILVC_HYDS03.094e-1225.91Ketol-acid reductoisomerase OS=Hydrogenobaculum sp... [more]
ILVC_DESVM3.094e-1230.50Ketol-acid reductoisomerase OS=Desulfovibrio vulga... [more]
ILVC_DESDA3.094e-1226.58Ketol-acid reductoisomerase OS=Desulfovibrio desul... [more]
ILVC_CAMC53.094e-1236.44Ketol-acid reductoisomerase OS=Campylobacter curvu... [more]
ILVC_RHOFD4.041e-1225.23Ketol-acid reductoisomerase OS=Rhodoferax ferrired... [more]
ILVC_DESVV4.041e-1227.03Ketol-acid reductoisomerase OS=Desulfovibrio vulga... [more]
ILVC_DESVH4.041e-1227.03Ketol-acid reductoisomerase OS=Desulfovibrio vulga... [more]
ILVC_CARHZ4.041e-1233.90Ketol-acid reductoisomerase OS=Carboxydothermus hy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185908 ID=CN185908; Name=CN185908; organism=Citrus sinensis; type=EST; length=771bp
GCGGTATTTCTGATGCTGCTCAGGCGGATAATTATGAGAAGATATTCTCT
TGCATGAAACCAAACAGCATCCTTGGACTTTCCCATGGGTTCCTTCTTGG
GCATTTGCAGTCAATGGGACTTGATTTCCCAAAGAATATCGGTGTGATTG
CTGTGTGTCCCAAGGGAATGGGTCCATCTGTGAGGAGACTCTATGTTCAA
GGCAAAGAGATTAATGGTGCTGGAATTAATTCCAGTTTTGCTGTCCACCA
GGATGTTGATGGAAGAGCTACCAATGTCGCCCTAGGATGGTCAGTTGCCC
TTGGTTCTCCTTTCACATTTGCCACCACATTAGAGCAGGAGTACAGGAGT
GACATCTTTGGGGAGCGTGGCATTCTACTTGGTGCTGTTCATGGAATTGT
GGAATCCTTGTTTAGAAGGTTCACTGAAAATGGAATGAATGAGGATCTGG
CTTACAAGAATACCGTGGAGTGCATAACAGGAATTATATCAAAGATCATC
TCAACTCAGGGTATGTTGGCTGTCTACAATTCCTTCTCTGGAGAAGACAA
AAAGGAATTCGAGAAAGCTTATAGTGCCTCATATTATCCGTGCATGGAAA
TCTTATATGAGTGCTATGAAGATGTGGCCGCTGGCAGTGAGATCCGCAGT
GTTGTCTTGGCTGGACGTCGGTTTTATGAAAAGGAAGGTCTACCAGCTTT
CCCTATGGGAAAAATTGATCAGACTCGCATGTGGAAAGTTGGTGAGCGAG
TCCGATCAACACGTCCAGCAG
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