CN185841

Overview
NameCN185841
Unique NameCN185841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL17_MOUSE (60S ribosomal protein L17 OS=Mus musculus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.625e-37
Identity = 77/111 (69.37%), Postives = 90/111 (81.08%), Query Frame = -2
Query:  302 RRAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 634
            R+A +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   42 RKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL17_BOVIN (60S ribosomal protein L17 OS=Bos taurus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.625e-37
Identity = 77/111 (69.37%), Postives = 90/111 (81.08%), Query Frame = -2
Query:  302 RRAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 634
            R+A +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   42 RKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL17_IXOSC (60S ribosomal protein L17 OS=Ixodes scapularis GN=RpL17 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.772e-37
Identity = 78/111 (70.27%), Postives = 90/111 (81.08%), Query Frame = -2
Query:  302 RRAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 634
            RRA+RYL++V+A K+ +PF RF GGVGR AQAK      QGRWP KSA+F+  LL+NAESNA+ KGLDVD L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ LS
Sbjct:   42 RRAQRYLKNVIAKKEIVPFRRFNGGVGRKAQAK-AFGCTQGRWPKKSAEFLWQLLRNAESNADYKGLDVDRLVIDHIQVNRAPKMRRRTYRAHGRINPYMSSPCHIEVILS 151          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL17_ARGMO (60S ribosomal protein L17 OS=Argas monolakensis GN=RpL17 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.728e-37
Identity = 77/111 (69.37%), Postives = 90/111 (81.08%), Query Frame = -2
Query:  302 RRAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 634
            RRA+RYL++V+A K+ +PF RF GGVGR AQAK      QGRWP KSA+F+  LL+NAESNA+ KGLDVD L I HIQVN+A K RRRTYRAHGRINPYMSSPCH+E+ LS
Sbjct:   42 RRAQRYLKNVIAKKEIVPFRRFNGGVGRKAQAKAWGCT-QGRWPKKSAEFLWQLLRNAESNADYKGLDVDRLVIDHIQVNRAPKMRRRTYRAHGRINPYMSSPCHVEVILS 151          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL17_CAEEL (60S ribosomal protein L17 OS=Caenorhabditis elegans GN=rpl-17 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.065e-37
Identity = 76/111 (68.47%), Postives = 86/111 (77.48%), Query Frame = -2
Query:  302 RRAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 634
            RRA+ +L  V  HK+ +PF RF GG+GR AQ K  +   QGRWPVKSA F+LDLLKNAESNAE KGLDVD L I HI V +A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   44 RRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTT-QGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 153          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL17_PECGU (60S ribosomal protein L17 OS=Pectinaria gouldii GN=rpl-17 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.376e-36
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = -2
Query:  305 RAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 631
            +A+ YL +V+ HKQ IPF R  GGVGR AQAKN +   QGRWP KS +F+L LLKNAESNAE++GLDVD+L ++H+ V+ A K RRRTYRAHGRINPYMSSPCHIEL L
Sbjct:   43 KARSYLSNVVEHKQCIPFRRHKGGVGRCAQAKNFNTT-QGRWPKKSCEFMLQLLKNAESNAELRGLDVDSLVVAHVSVDAAAKMRRRTYRAHGRINPYMSSPCHIELCL 150          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL17_LONON (60S ribosomal protein L17 OS=Lonomia obliqua GN=RpL17 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.797e-36
Identity = 82/131 (62.60%), Postives = 92/131 (70.23%), Query Frame = -2
Query:  242 RRAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLATSKSK 634
            RRA RYL++V   K+ IPF RF GGVGR AQAK +    QGRWP KSA+F L LL+NAESNA+ KGLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ LS           T  A +K K
Sbjct:   42 RRAVRYLKNVTEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFPLQLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVALSEREDAVSRAAPTDDAPAKKK 171          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL17_PHLPP (60S ribosomal protein L17 OS=Phlebotomus papatasi GN=RpL17 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.003e-36
Identity = 75/111 (67.57%), Postives = 90/111 (81.08%), Query Frame = -2
Query:  302 RRAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 634
            RRA+R+L++V+  K+ +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+ KGLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   42 RRAQRFLKNVVEKKECVPFRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVILT 151          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL17_ANOGA (60S ribosomal protein L17 OS=Anopheles gambiae GN=RpL17 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.003e-36
Identity = 75/111 (67.57%), Postives = 91/111 (81.98%), Query Frame = -2
Query:  302 RRAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 634
            RRA+R+L++V+  K+ +PF RF GGVGR AQAK+      GRWP KSA+F+L LLKNAE+NA+ KGLDVD L I+HIQVN+A   RRRTYRAHGRINPYMSSPCHIEL+L+
Sbjct:   42 RRAQRFLKNVIEKKECVPFRRFNGGVGRCAQAKH-WGTSVGRWPKKSAEFLLQLLKNAEANADYKGLDVDRLVINHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIELSLT 151          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL17_BOMMO (60S ribosomal protein L17 OS=Bombyx mori GN=RpL17 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.228e-36
Identity = 81/131 (61.83%), Postives = 93/131 (70.99%), Query Frame = -2
Query:  242 RRAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLATSKSK 634
            RRA RYL++V+  K+ IPF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ LS           T  A +K K
Sbjct:   42 RRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAPAKKK 171          
The following BLAST results are available for this feature:
BLAST of CN185841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RL17_MOUSE1.625e-3769.3760S ribosomal protein L17 OS=Mus musculus GN=Rpl17... [more]
RL17_BOVIN1.625e-3769.3760S ribosomal protein L17 OS=Bos taurus GN=RPL17 P... [more]
RL17_IXOSC2.772e-3770.2760S ribosomal protein L17 OS=Ixodes scapularis GN=... [more]
RL17_ARGMO4.728e-3769.3760S ribosomal protein L17 OS=Argas monolakensis GN... [more]
RL17_CAEEL8.065e-3768.4760S ribosomal protein L17 OS=Caenorhabditis elegan... [more]
RL17_PECGU1.376e-3667.8960S ribosomal protein L17 OS=Pectinaria gouldii GN... [more]
RL17_LONON1.797e-3662.6060S ribosomal protein L17 OS=Lonomia obliqua GN=Rp... [more]
RL17_PHLPP4.003e-3667.5760S ribosomal protein L17 OS=Phlebotomus papatasi ... [more]
RL17_ANOGA4.003e-3667.5760S ribosomal protein L17 OS=Anopheles gambiae GN=... [more]
RL17_BOMMO5.228e-3661.8360S ribosomal protein L17 OS=Bombyx mori GN=RpL17 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185841 ID=CN185841; Name=CN185841; organism=Citrus sinensis; type=EST; length=665bp
TTTTTTTTTTTTTTTTTAAGCTTGAAAAGTCTTTAATTTTCATAACCCTT
CAACAGTATGACTGAGGATTCTAACAAAACAGTAAACTGGACGTAATATG
AAATAAACAAAATATGATGTCTGATTTGACTAAATAACATCTCAGTCACT
ATTAAAGGTAAAAAAACTCACTTCATCAAGAACACAAAATAGAAAATCAG
GGCACTCTCCAATTGCTATGCTAAACCTCAGACAATTACTTCTTTGATTT
GCTAGTTGCCAACTGGGTCTCAGGCTCTTTCTTTACTGGCTCTTCCTTTT
CAGATAAGGTCAACTCAATATGGCAGGGAGAGGACATGTAAGGATTAATT
CTTCCATGAGCACGGTATGTGCGGCGCCTTTGCTTTTGTGCCTGGTTGAC
TTGGATGTGAGAAATGTAGAGTGCATCAACATCTAAACCTTTCACCTCAG
CATTACTCTCAGCATTCTTGAGCAAGTCAAGAATGAACTTTGCTGATTTG
ACAGGCCATCGTCCCTGTCCATTTGGATGCCTATTCTTTGCCTGAGCAGT
ACGTCCAACACCACCGCAGAATCGTGTGAAGGGAATGGCCTGTTTATGGG
CCATAACATCCTCCAAATACCTCTTAGCCCTTCGTCAAAGGCAATTTCCT
GATGGCATGGGCAGT
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