CN185841

Overview
NameCN185841
Unique NameCN185841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_PYRKO (50S ribosomal protein L22P OS=Pyrococcus kodakaraensis GN=rpl22p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.137e-13
Identity = 45/108 (41.67%), Postives = 59/108 (54.63%), Query Frame = -2
Query:  305 AKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 628
            A RYL+DV+A K+ +P  RF    G     K     G GR+PVK AK +  +L NA++NAE KGLDVD L I H   ++    R    RA GR  P+     HIE+ +
Sbjct:   48 ALRYLDDVIAKKRPVPMKRFNDSQGH----KPGKGFGPGRYPVKVAKAVKKILLNAKNNAEQKGLDVDRLKIIHAAAHRGPVLRGYIPRAFGRATPFNEQTTHIEIVV 151          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_HYPBU (50S ribosomal protein L22P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.761e-13
Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = -2
Query:  302 AKRYLEDVMAHKQAIPFTRFCGGVG--RTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 628
            A+R+LE V   ++ IP  R+ G     R   AK + P G  R+PVK+AK +L LL N  +NAEVKGLD + L I HI V++ +  +R   RA GR  P      HIE+ ++
Sbjct:   45 ARRFLERVARGEEPIPVRRYSGKQAHHRGLAAKYKWPIG--RYPVKAAKILLRLLDNVTNNAEVKGLDTERLRIVHIAVHKGRVLKRWMPRAFGRATPKFKKYSHIEIVVA 153          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_METST (50S ribosomal protein L22P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.219e-13
Identity = 45/108 (41.67%), Postives = 63/108 (58.33%), Query Frame = -2
Query:  305 AKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 628
            AK +LEDV+A K  +PF R    VG  +  K       GR+PVK+A  IL +L+NAE+NAE + LDV+ L + H+  N+    R  T RA GR +P  +   HI++ L
Sbjct:   47 AKAFLEDVIAKKTVVPFKRHNKKVGHRSDLKGWP---SGRYPVKAAAAILKVLENAEANAENEELDVENLKLVHVCANRGVIIRGWTPRAFGRASPSNTPTTHIQIVL 151          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_METJA (50S ribosomal protein L22P OS=Methanocaldococcus jannaschii GN=rpl22p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.219e-13
Identity = 43/108 (39.81%), Postives = 63/108 (58.33%), Query Frame = -2
Query:  305 AKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 628
            A ++LEDV+A ++ + F R C  VG     K +     GR+PVK+AK IL +L++A++NAE KGL+ + L I HI  N+    +R   RA GR  P      HI++ L
Sbjct:   48 AIKFLEDVIAMRRPVLFRRHCKKVGHR---KGKLGWPAGRYPVKAAKAILKILQHAKANAEYKGLNTEKLRIKHISTNKGITIKRYMPRAFGRATPKFQETVHIQVIL 152          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_METTH (50S ribosomal protein L22P OS=Methanobacterium thermoautotrophicum GN=rpl22p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.385e-12
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = -2
Query:  305 RAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG--QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 631
            +AK+YLE+V+  ++ + F R+   VG       R  NG   GR+PVK+A  IL +L+NAE+NAE KGLD + L I HI  ++    R    RA GR  P+ +   H+++ L
Sbjct:   45 KAKKYLEEVIRMERPVAFKRYNRKVGH-----RRGLNGWASGRYPVKAAGQILKVLENAEANAEYKGLDTEKLRIIHISSHRGPVIRGWIPRAFGRATPFNTPTTHVQIVL 150          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_METKA (50S ribosomal protein L22P OS=Methanopyrus kandleri GN=rpl22p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.385e-12
Identity = 44/109 (40.37%), Postives = 63/109 (57.80%), Query Frame = -2
Query:  305 RAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 631
            RAK +L  V+  ++A+PF +    V    Q   R     GR+P K+A+ IL +L++AE+NAE KGLD D LYI HI  ++ +  R    RA GR  P+ +   HIE+ L
Sbjct:   50 RAKEFLRRVIRKEEAVPFRKHKKKVPHRRQI--RPGWDAGRFPEKAAREILRVLEHAEANAEYKGLDTDRLYIKHIAAHKGRVIRGWIPRAFGRATPFNTPTTHIEVIL 156          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_THEPD (50S ribosomal protein L22P OS=Thermofilum pendens (strain Hrk 5) GN=rpl22p PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.809e-12
Identity = 41/106 (38.68%), Postives = 58/106 (54.72%), Query Frame = -2
Query:  311 AKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 628
            A+R L ++   K+++P  R+   VG  +        G GR+PVK AK +L LL N E+NAE KGL+V+ L I H   ++  K R    RA GR  PY     H+E+
Sbjct:   45 ARRILTEIAEMKRSVPLKRYNKKVGHRSDVP-----GPGRYPVKVAKNLLKLLDNLENNAEFKGLNVENLRIVHAAAHKGMKIRNYLPRAFGRATPYYDQLVHVEI 145          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_HALWD (50S ribosomal protein L22P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.086e-12
Identity = 36/108 (33.33%), Postives = 65/108 (60.19%), Query Frame = -2
Query:  305 AKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 628
            A+ YL+DV+A +Q++PF +   GVG  +          GR+P K++K  L+L++N  SNA  +G D +A+ I H+  ++  +++ R  RA G  +P+ ++ C +EL +
Sbjct:   44 AESYLDDVIAQRQSVPFRQHNSGVGHRSDIDGWDA---GRYPEKASKAFLELIENVASNANEQGFDGNAMAIRHVAAHKVGERQGRKPRAFGSADPWNTTICDVELII 148          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_ARCFU (50S ribosomal protein L22P OS=Archaeoglobus fulgidus GN=rpl22p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.264e-12
Identity = 42/106 (39.62%), Postives = 59/106 (55.66%), Query Frame = -2
Query:  311 AKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 628
            A++ LEDV+  K+AIPF R      + A  +       GR+P K+AK++L +L+N E+NAE KGLDV+ L I H Q  + +   R   RA GR  P       +EL
Sbjct:   48 ARKLLEDVVEMKRAIPFKRH---KKKVAHRRGLEKWYAGRYPQKAAKYVLKVLRNLEANAEYKGLDVENLVIVHAQAQKGRVIERYMPRAFGRATPRFQQLTTVEL 150          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_PYRHO (50S ribosomal protein L22P OS=Pyrococcus horikoshii GN=rpl22p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 44/108 (40.74%), Postives = 59/108 (54.63%), Query Frame = -2
Query:  305 AKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 628
            A RYL++V+A K+ +P  R+    G     K     G GR+PVK AK I  +L NA++NAE KGLD D L I HI  ++    R    RA GR  P+     HIE+ +
Sbjct:   47 ALRYLDEVIALKRPVPLRRYNDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNAKNNAEQKGLDPDKLKIIHIAAHRGPVLRGWYPRAFGRATPFNEQTTHIEVVV 150          
The following BLAST results are available for this feature:
BLAST of CN185841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RL22_PYRKO2.137e-1341.6750S ribosomal protein L22P OS=Pyrococcus kodakarae... [more]
RL22_HYPBU4.761e-1341.4450S ribosomal protein L22P OS=Hyperthermus butylic... [more]
RL22_METST6.219e-1341.6750S ribosomal protein L22P OS=Methanosphaera stadt... [more]
RL22_METJA6.219e-1339.8150S ribosomal protein L22P OS=Methanocaldococcus j... [more]
RL22_METTH1.385e-1239.6450S ribosomal protein L22P OS=Methanobacterium the... [more]
RL22_METKA1.385e-1240.3750S ribosomal protein L22P OS=Methanopyrus kandler... [more]
RL22_THEPD1.809e-1238.6850S ribosomal protein L22P OS=Thermofilum pendens ... [more]
RL22_HALWD3.086e-1233.3350S ribosomal protein L22P OS=Haloquadratum walsby... [more]
RL22_ARCFU5.264e-1239.6250S ribosomal protein L22P OS=Archaeoglobus fulgid... [more]
RL22_PYRHO6.875e-1240.7450S ribosomal protein L22P OS=Pyrococcus horikoshi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185841 ID=CN185841; Name=CN185841; organism=Citrus sinensis; type=EST; length=665bp
TTTTTTTTTTTTTTTTTAAGCTTGAAAAGTCTTTAATTTTCATAACCCTT
CAACAGTATGACTGAGGATTCTAACAAAACAGTAAACTGGACGTAATATG
AAATAAACAAAATATGATGTCTGATTTGACTAAATAACATCTCAGTCACT
ATTAAAGGTAAAAAAACTCACTTCATCAAGAACACAAAATAGAAAATCAG
GGCACTCTCCAATTGCTATGCTAAACCTCAGACAATTACTTCTTTGATTT
GCTAGTTGCCAACTGGGTCTCAGGCTCTTTCTTTACTGGCTCTTCCTTTT
CAGATAAGGTCAACTCAATATGGCAGGGAGAGGACATGTAAGGATTAATT
CTTCCATGAGCACGGTATGTGCGGCGCCTTTGCTTTTGTGCCTGGTTGAC
TTGGATGTGAGAAATGTAGAGTGCATCAACATCTAAACCTTTCACCTCAG
CATTACTCTCAGCATTCTTGAGCAAGTCAAGAATGAACTTTGCTGATTTG
ACAGGCCATCGTCCCTGTCCATTTGGATGCCTATTCTTTGCCTGAGCAGT
ACGTCCAACACCACCGCAGAATCGTGTGAAGGGAATGGCCTGTTTATGGG
CCATAACATCCTCCAAATACCTCTTAGCCCTTCGTCAAAGGCAATTTCCT
GATGGCATGGGCAGT
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