CN185835

Overview
NameCN185835
Unique NameCN185835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_CRYNE (Elongation factor 1-alpha OS=Cryptococcus neoformans GN=TEF1 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 8.557e-37
Identity = 73/116 (62.93%), Postives = 89/116 (76.72%), Query Frame = -2
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            P  EAA+F +QVI++NHPGQIG GY PVLDCH +HIA KF+EL+ KIDRR+GK +E  PKF+K+GDA            VET++DYPP GRFAVRDMRQTVAVGVIK+V+K +  G
Sbjct:  331 PPMEAASFNAQVIVLNHPGQIGAGYTPVLDCHTAHIACKFAELIEKIDRRTGKVMEAAPKFVKSGDAAIVKLVAQKPLCVETYADYPPLGRFAVRDMRQTVAVGVIKSVDKTEKGG 446          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A4_OSCTI (Elongation factor 1-alpha 4 OS=Oscheius tipulae GN=eft-4 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.460e-36
Identity = 74/113 (65.49%), Postives = 87/113 (76.99%), Query Frame = -2
Query:  258 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKD 596
            PA+E+ +FT+QVI+MNHPGQIG GY PVLDCH +HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG           VE F+DY P GRFAVRDMRQTVAVGVIK V K D
Sbjct:  333 PAKESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDLPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDD 445          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_AURPU (Elongation factor 1-alpha OS=Aureobasidium pullulans GN=TEF1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.490e-36
Identity = 73/116 (62.93%), Postives = 86/116 (74.14%), Query Frame = -2
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            P +   +F +QVI++NHPGQ+G GYAPVLDCH +HIA KFSELV KIDRR+GK +E  PKF+K+GDA            VE F+DYPP GRFAVRDMRQTVAVGVIK+V K D  G
Sbjct:  330 PPKGCDSFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELVEKIDRRTGKSVEAAPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVAKSDKQG 445          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_ARTSA (Elongation factor 1-alpha OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.252e-36
Identity = 73/115 (63.48%), Postives = 86/115 (74.78%), Query Frame = -2
Query:  252 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPT 596
            PAR + +F +QVI++NHPGQI NGY PVLDCH +HIA KF+E+  K DRR+GK  E EPKF+K+GDA            VE FSD+PP GRFAVRDMRQTVAVGVIK+V  KDPT
Sbjct:  333 PARGSQDFFAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEAEPKFIKSGDAAMITLVPSKPLCVEAFSDFPPLGRFAVRDMRQTVAVGVIKSVNFKDPT 447          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_AJECG (Elongation factor 1-alpha OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=TEF PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.252e-36
Identity = 72/115 (62.61%), Postives = 86/115 (74.78%), Query Frame = -2
Query:  252 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPT 596
            P +   +F +QVI++NHPGQ+G GYAPVLDCH +HIA KFSEL+ KIDRR+GK +E  PKF+K+GDA            VE F+DYPP GRFAVRDMRQTVAVGVIK+V K D T
Sbjct:  332 PPKGCESFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELIEKIDRRTGKSVENNPKFIKSGDAAIVKMVPSKPMCVEPFTDYPPLGRFAVRDMRQTVAVGVIKSVIKSDKT 446          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A3_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-3 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.252e-36
Identity = 76/116 (65.52%), Postives = 89/116 (76.72%), Query Frame = -2
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            PA+E+A+FT+QVII+NHPGQI  GYAPVLDCH +HIA KFSEL+ KIDRRS K +E  PKF+K+GD+            VE ++DYPP GRFAVRDMRQTVAVGVIK VEK D  G
Sbjct:  331 PAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSEK-MEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 445          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_TRIRE (Elongation factor 1-alpha OS=Trichoderma reesei GN=tef1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.546e-36
Identity = 73/111 (65.77%), Postives = 85/111 (76.58%), Query Frame = -2
Query:  264 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEK 596
            P   AA+FT+QVI+MNHPGQ+G GYAPVLDCH +HIA KF+EL+ KIDRR+GK  E  PKF+K+GD+            VE F+DYPP GRFAVRDMRQTVAVGVIK VEK
Sbjct:  332 PPMGAASFTAQVIVMNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKATESAPKFIKSGDSAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVEK 442          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_STYLE (Elongation factor 1-alpha OS=Stylonychia lemnae GN=EFAA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.546e-36
Identity = 71/116 (61.21%), Postives = 87/116 (75.00%), Query Frame = -2
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            PA++  NF +QVI++NHPGQI  GYAPVLDCH +HIA KF E+ +K+DRRSGK LE+EPKF+K+G+A            VE F+ YPP GRFAVRDM+QTVAVGVIK V KK+  G
Sbjct:  321 PAKDTTNFLAQVIVLNHPGQIQKGYAPVLDCHTAHIACKFDEIESKVDRRSGKVLEEEPKFIKSGEAALVRMVPQKPMCVEAFNQYPPLGRFAVRDMKQTVAVGVIKEVVKKEQKG 436          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_YARLI (Elongation factor 1-alpha OS=Yarrowia lipolytica GN=TEF PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 7.244e-36
Identity = 71/116 (61.21%), Postives = 86/116 (74.14%), Query Frame = -2
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            P +   +F +QVI++NHPGQIG GYAPVLDCH +HIA KF  L+ KIDRR+GK++E  PKF+K+GDA            VE F++YPP GRFAVRDMRQTVAVGVIK+VEK D  G
Sbjct:  332 PPKGCDSFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFDTLIEKIDRRTGKKMEDSPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKSVEKSDKAG 447          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.244e-36
Identity = 74/113 (65.49%), Postives = 83/113 (73.45%), Query Frame = -2
Query:  258 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKD 596
            PA+EAA F SQVIIMNHPGQI  GY PVLDCH +HIA KF  +  KIDRR+GK  E+ PKF+KNGDA            VE F +YPP GR+AVRDM+QTVAVGVIK VEKKD
Sbjct:  322 PAKEAATFYSQVIIMNHPGQIQAGYTPVLDCHTAHIACKFETIHDKIDRRTGKSQEENPKFIKNGDAALVTLIPTKALCVEVFQEYPPLGRYAVRDMKQTVAVGVIKKVEKKD 434          
The following BLAST results are available for this feature:
BLAST of CN185835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_CRYNE8.557e-3762.93Elongation factor 1-alpha OS=Cryptococcus neoforma... [more]
EF1A4_OSCTI1.460e-3665.49Elongation factor 1-alpha 4 OS=Oscheius tipulae GN... [more]
EF1A_AURPU2.490e-3662.93Elongation factor 1-alpha OS=Aureobasidium pullula... [more]
EF1A_ARTSA3.252e-3663.48Elongation factor 1-alpha OS=Artemia salina PE=1 S... [more]
EF1A_AJECG3.252e-3662.61Elongation factor 1-alpha OS=Ajellomyces capsulata... [more]
EF1A3_RHIRA3.252e-3665.52Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_TRIRE5.546e-3665.77Elongation factor 1-alpha OS=Trichoderma reesei GN... [more]
EF1A_STYLE5.546e-3661.21Elongation factor 1-alpha OS=Stylonychia lemnae GN... [more]
EF1A_YARLI7.244e-3661.21Elongation factor 1-alpha OS=Yarrowia lipolytica G... [more]
EF1A_TETPY7.244e-3665.49Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185835 ID=CN185835; Name=CN185835; organism=Citrus sinensis; type=EST; length=597bp
AAATTTTTAAAATNGAGGAATAAGGGGTAATTTTGAAATAAAATGTTTGA
AATTAAAAAAATGGTTTATTAAATTAAAAAAAAAAAATTTTGATATAAAA
AAAAATTTAGAGAATTAAAATGAAGTCCCGTAAAACAAACTAAAACACGG
GAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTATAGCAAATAGATC
CCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGGGGACCTTGGCAC
CTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAACAGCAACAGTC
TGACGCATGTCCCTAACGGCAAAACGACCAAAAGGGGGGTAGTCAGAAAA
GGTTTCAACAACCATGGGGGGGGGGGGAATCATCTTAACCATTCCAGCAT
CTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGC
CTATCAATCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGG
GTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTGGCCAGGGTGGT
TCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCCTGGCTGGA
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