CN185835

Overview
NameCN185835
Unique NameCN185835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_ARXAD (Elongation factor 1-alpha OS=Arxula adeninivorans GN=TEF PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.108e-35
Identity = 72/113 (63.72%), Postives = 85/113 (75.22%), Query Frame = -2
Query:  258 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKD 596
            P +   +FT+QVII NHPGQI  GY+PVLDCH +HIA +F EL+ KIDRRSGK++E  PKF+K GDA            VETF++YPP GRFAVRDMRQTVAVGVIK+VEK D
Sbjct:  331 PPKGCDSFTAQVIIFNHPGQISAGYSPVLDCHTAHIACRFDELIEKIDRRSGKKVEDSPKFVKAGDAAIVRMIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSVEKSD 443          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.595e-35
Identity = 71/116 (61.21%), Postives = 85/116 (73.28%), Query Frame = -2
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            P + A NFT+QVI++NHPGQI NGY PVLDCH +HIA KF+E+  K+DRRSGK  E  PK +K+GDA            VE+F ++PP GRFAVRDMRQTVAVGVIK+V  KD TG
Sbjct:  282 PPKGAENFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKXKVDRRSGKSTEDNPKAIKSGDAAIVILQPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVVFKDATG 397          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A2_SCHPO (Elongation factor 1-alpha-B/C OS=Schizosaccharomyces pombe GN=tef1b PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.695e-35
Identity = 73/114 (64.04%), Postives = 86/114 (75.44%), Query Frame = -2
Query:  255 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDP 596
            P    A+FT+QVII+NHPGQI  GY+PVLDCH +HIA KF+EL+ KIDRRSGK++E+ PKF+K+GDA            VE F+DY P GRFAVRDMRQTVAVGVIK VEK  P
Sbjct:  331 PPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAP 444          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A1_SCHPO (Elongation factor 1-alpha-A OS=Schizosaccharomyces pombe GN=tef1a PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 4.695e-35
Identity = 73/114 (64.04%), Postives = 86/114 (75.44%), Query Frame = -2
Query:  255 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDP 596
            P    A+FT+QVII+NHPGQI  GY+PVLDCH +HIA KF+EL+ KIDRRSGK++E+ PKF+K+GDA            VE F+DY P GRFAVRDMRQTVAVGVIK VEK  P
Sbjct:  331 PPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAP 444          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.009e-35
Identity = 73/111 (65.77%), Postives = 85/111 (76.58%), Query Frame = -2
Query:  264 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEK 596
            PA EAA+F +QVII+NHPG+I  GY PVLDCH +HIA KF+EL+ KIDRRSGK +E EPK +K+GDA            VE+FS YPP GRFAVRDMRQTVAVGVIK V+K
Sbjct:  335 PAIEAASFKAQVIILNHPGEIHAGYQPVLDCHTAHIACKFAELLEKIDRRSGKVIETEPKMVKSGDAAIINLIPSKGMCVESFSQYPPLGRFAVRDMRQTVAVGVIKEVDK 445          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A2_DROME (Elongation factor 1-alpha 2 OS=Drosophila melanogaster GN=Ef1alpha100E PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.366e-34
Identity = 71/115 (61.74%), Postives = 85/115 (73.91%), Query Frame = -2
Query:  252 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPT 596
            P R AA+FT+QVI++NHPGQI NGY PVLDCH +HIA KFSE+  K DRR+GK  E EPK +K+GDA            VE+F ++PP GRFAVRDMRQTVAVGVIK+V  K+ T
Sbjct:  333 PPRGAADFTAQVIVLNHPGQIANGYTPVLDCHTAHIACKFSEIKEKCDRRTGKTTETEPKAIKSGDAAIIVLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVNFKETT 447          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_ASHGO (Elongation factor 1-alpha OS=Ashbya gossypii GN=TEF PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.043e-34
Identity = 71/116 (61.21%), Postives = 83/116 (71.55%), Query Frame = -2
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            P + A +F + VI++NHPGQI  GY+PVLDCH +HIA KF EL+ K DRR+GK+LE  PKFLK GDA            VE F+DYPP GRFAVRDMRQTVAVGVIK+V K D  G
Sbjct:  331 PPKAAESFNATVIVLNHPGQISAGYSPVLDCHTAHIACKFDELLEKNDRRTGKKLEDSPKFLKAGDAAMVKFVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVVKSDKAG 446          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_EIMBO (Elongation factor 1-alpha (Fragment) OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.975e-34
Identity = 69/116 (59.48%), Postives = 87/116 (75.00%), Query Frame = -2
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            PA+ AA+F +QVI+++HPGQI  GY+PV+DCH +HIA KF+ L  ++DRRSGK LE +PKF+K GDA            VE+F +YPP GRFAVRDM+QTVAVGVIK VEKK+  G
Sbjct:  218 PAKAAASFQAQVIVLHHPGQINPGYSPVVDCHTAHIACKFAVLEKRLDRRSGKALEDDPKFIKTGDAAIIKMEPSKPMCVESFIEYPPLGRFAVRDMKQTVAVGVIKGVEKKEAGG 333          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.975e-34
Identity = 70/116 (60.34%), Postives = 84/116 (72.41%), Query Frame = -2
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            P R AA+FT+QVI++NHPGQI NGY PVLDCH +HIA KF+E+  K DRR+GK  E+ PK +K+GDA            VE F ++PP GRFAVRDMRQTVAVGVIK+V  KD  G
Sbjct:  333 PPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTFKDTQG 448          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_YEAST (Elongation factor 1-alpha OS=Saccharomyces cerevisiae GN=TEF1 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.855e-34
Identity = 69/113 (61.06%), Postives = 84/113 (74.34%), Query Frame = -2
Query:  258 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKD 596
            P +  A+F + VI++NHPGQI  GY+PVLDCH +HIA +F EL+ K DRRSGK+LE  PKFLK+GDA            VE FS+YPP GRFAVRDMRQTVAVGVIK+V+K +
Sbjct:  331 PPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKTE 443          
The following BLAST results are available for this feature:
BLAST of CN185835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_ARXAD2.108e-3563.72Elongation factor 1-alpha OS=Arxula adeninivorans ... [more]
EF1A_RHYAM3.595e-3561.21Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]
EF1A2_SCHPO4.695e-3564.04Elongation factor 1-alpha-B/C OS=Schizosaccharomyc... [more]
EF1A1_SCHPO4.695e-3564.04Elongation factor 1-alpha-A OS=Schizosaccharomyces... [more]
EF1A_HYDAT8.009e-3565.77Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A2_DROME1.366e-3461.74Elongation factor 1-alpha 2 OS=Drosophila melanoga... [more]
EF1A_ASHGO3.043e-3461.21Elongation factor 1-alpha OS=Ashbya gossypii GN=TE... [more]
EF1A_EIMBO3.975e-3459.48Elongation factor 1-alpha (Fragment) OS=Eimeria bo... [more]
EF1A_APIME3.975e-3460.34Elongation factor 1-alpha OS=Apis mellifera PE=3 S... [more]
EF1A_YEAST8.855e-3461.06Elongation factor 1-alpha OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185835 ID=CN185835; Name=CN185835; organism=Citrus sinensis; type=EST; length=597bp
AAATTTTTAAAATNGAGGAATAAGGGGTAATTTTGAAATAAAATGTTTGA
AATTAAAAAAATGGTTTATTAAATTAAAAAAAAAAAATTTTGATATAAAA
AAAAATTTAGAGAATTAAAATGAAGTCCCGTAAAACAAACTAAAACACGG
GAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTATAGCAAATAGATC
CCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGGGGACCTTGGCAC
CTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAACAGCAACAGTC
TGACGCATGTCCCTAACGGCAAAACGACCAAAAGGGGGGTAGTCAGAAAA
GGTTTCAACAACCATGGGGGGGGGGGGAATCATCTTAACCATTCCAGCAT
CTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGC
CTATCAATCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGG
GTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTGGCCAGGGTGGT
TCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCCTGGCTGGA
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