CN185835

Overview
NameCN185835
Unique NameCN185835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.855e-34
Identity = 66/115 (57.39%), Postives = 86/115 (74.78%), Query Frame = -2
Query:  252 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPT 596
            PA+   +FT+QVI++NHPG+I NGY+PV+DCH +HI+ KF  +  K+D+RSGK LE+ PK +K+GDA            VE F+DYPP GRFAVRDM+QTVAVGVIK+V KK+ T
Sbjct:  317 PAKGCEDFTAQVIVLNHPGEIKNGYSPVVDCHTAHISCKFQTITAKMDKRSGKVLEENPKLIKSGDAALVVMQPLKPLCVEAFTDYPPLGRFAVRDMKQTVAVGVIKSVTKKEAT 431          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_BOMMO (Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.576e-33
Identity = 68/116 (58.62%), Postives = 84/116 (72.41%), Query Frame = -2
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            P + AA+FT+QVI++NHPGQI NGY PVLDCH +HIA KF+E+  K+DRR+GK  E  PK +K+GDA            VE+F ++PP GRFAVRDMRQTVAVGVIK V  K+  G
Sbjct:  333 PPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGG 448          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.670e-32
Identity = 67/112 (59.82%), Postives = 80/112 (71.43%), Query Frame = -2
Query:  261 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKK 596
            PA +  +F S  I+MNHPG+I  GY PV+DCH +HIA KF EL+TK D+RSGK  E+ PKFLK GDAG           VETF+ Y P GRFAVRDMRQTVAVGVI+ ++KK
Sbjct:  321 PATDTESFVSHTIVMNHPGEIKAGYTPVIDCHTAHIACKFEELLTKADKRSGKMTEENPKFLKAGDAGLIRLSPSKPLCVETFATYAPLGRFAVRDMRQTVAVGVIQEIKKK 432          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.082e-31
Identity = 61/113 (53.98%), Postives = 85/113 (75.22%), Query Frame = -2
Query:  258 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKD 596
            PA+  + FT+QVII+NHPG+I NGY P+LDCH SHI+ KF  + +KID+RSGK +E+ PK +K+GD+            VETF++YPP GRFA+RDMRQT+AVG+I  +++K+
Sbjct:  319 PAKGCSKFTAQVIILNHPGEIKNGYTPLLDCHTSHISCKFLNIDSKIDKRSGKVVEENPKAIKSGDSALVSLEPKKPMVVETFTEYPPLGRFAIRDMRQTIAVGIINQLKRKN 431          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.372e-31
Identity = 66/110 (60.00%), Postives = 81/110 (73.64%), Query Frame = -2
Query:  270 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELE-KEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNV 596
            PA    +FT+QVI+MNHPGQI  GY PVLDCH SHIA KF EL++KIDRR+GK +E  EP+++KNGD+            VE F+ +PP GRFAVRDM+QTVAVGV+K V
Sbjct:  319 PAVGCEDFTAQVIVMNHPGQIRKGYTPVLDCHTSHIACKFEELLSKIDRRTGKSMEGGEPEYIKNGDSALVKIVPTKPLCVEEFAKFPPLGRFAVRDMKQTVAVGVVKAV 428          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A1_XENLA (Elongation factor 1-alpha OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 5.372e-31
Identity = 65/112 (58.04%), Postives = 81/112 (72.32%), Query Frame = -2
Query:  261 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKK 596
            P  EA++FT+QVII+NHPG I  GY+PV+DCH +HI  +F+EL  KIDRR+GK+LE  P  LK+GDA            VE F DYPP GRFA RD++QTVAVGV+K+VE K
Sbjct:  336 PPTEASSFTAQVIILNHPGFIKAGYSPVIDCHTAHITCQFAELQEKIDRRTGKKLEDNPGLLKSGDAAIITLKPIKPFCVERFFDYPPLGRFAARDLKQTVAVGVVKSVEHK 447          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.197e-30
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  255 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKE---PKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDP 596
            P +E   F +QVI++NHPGQI  GY+PVLDCH +HIA KF+E+V K+DRR+G  + KE      LKNGDA            VE+F++YPP GRFAVRDMRQTVAVGVIK+  KK P
Sbjct:  321 PPQETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAP 437          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A2_EUPCR (Elongation factor 1-alpha 2 OS=Euplotes crassus GN=EFA2 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.984e-26
Identity = 58/115 (50.43%), Postives = 76/115 (66.09%), Query Frame = -2
Query:  252 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPT 596
            P + A +F +QVI+MNHPG I  GY PVLD H +H+A KF  L++K + R+GK +E+ PKFLKNG++G           VE FS Y   GRF +RDM++TVAVGVI+ V  K  T
Sbjct:  318 PPKNAESFIAQVIVMNHPGHIKAGYQPVLDIHTAHVATKFKTLLSKNEARTGKLIEEAPKFLKNGESGIVELVPTKPLCVEEFSKYAALGRFVIRDMKRTVAVGVIQEVIHKKET 432          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_BLAHO (Elongation factor 1-alpha OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.203e-26
Identity = 55/99 (55.56%), Postives = 72/99 (72.73%), Query Frame = -2
Query:  273 SQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKN 569
            +QVI+MNHP  I  GY PV+DCH +HIA KF ++++++D+R+GK L + P  +KNG +            VETFSDYPP GRFAVRDMRQTVAVG+IK+
Sbjct:  331 AQVIVMNHPSGIRPGYCPVVDCHTAHIACKFEKIMSEMDKRTGKVLRENPDIVKNGKSMMAQLVPSKPMCVETFSDYPPLGRFAVRDMRQTVAVGIIKS 429          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.875e-26
Identity = 53/95 (55.79%), Postives = 68/95 (71.58%), Query Frame = -2
Query:  312 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVR 596
            P + AA+FT+QVI++NHPGQI NGY PVLDCH +HIA KF+E+  K+DRR+GK  E  PK +K+GDA            VE+F ++PP GRFAVR
Sbjct:  319 PPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
The following BLAST results are available for this feature:
BLAST of CN185835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_CRYPV8.855e-3457.39Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A_BOMMO2.576e-3358.62Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1[more]
EF1A1_EUPCR1.670e-3259.82Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_PLAFK1.082e-3153.98Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A_ENTHI5.372e-3160.00Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A1_XENLA5.372e-3158.04Elongation factor 1-alpha OS=Xenopus laevis PE=1 S... [more]
EF1A_DICDI1.197e-3057.26Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A2_EUPCR3.984e-2650.43Elongation factor 1-alpha 2 OS=Euplotes crassus GN... [more]
EF1A_BLAHO5.203e-2655.56Elongation factor 1-alpha OS=Blastocystis hominis ... [more]
EF1A_SPOFR8.875e-2655.79Elongation factor 1-alpha (Fragment) OS=Spodoptera... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185835 ID=CN185835; Name=CN185835; organism=Citrus sinensis; type=EST; length=597bp
AAATTTTTAAAATNGAGGAATAAGGGGTAATTTTGAAATAAAATGTTTGA
AATTAAAAAAATGGTTTATTAAATTAAAAAAAAAAAATTTTGATATAAAA
AAAAATTTAGAGAATTAAAATGAAGTCCCGTAAAACAAACTAAAACACGG
GAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTATAGCAAATAGATC
CCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGGGGACCTTGGCAC
CTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAACAGCAACAGTC
TGACGCATGTCCCTAACGGCAAAACGACCAAAAGGGGGGTAGTCAGAAAA
GGTTTCAACAACCATGGGGGGGGGGGGAATCATCTTAACCATTCCAGCAT
CTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGC
CTATCAATCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGG
GTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTGGCCAGGGTGGT
TCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCCTGGCTGGA
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