CN185812
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 8.312e-23 Identity = 68/163 (41.72%), Postives = 91/163 (55.83%), Query Frame = 2 Query: 260 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML-ESL 745 S F LK +LLR I GFE PS +Q I Q I G DVI QA+SG GKTA F + LQ +L + ALVL TRELA QI Y+ +++ GG +K + ++ Q+V GTPGR+L + + L+ +NV+ ILDE D++L ESL Sbjct: 22 SPTFESMNLKDDLLRGIYGYGFEAPSAIQSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQAIDLKRKDLQALVLSPTRELASQINQVVSNLGDYM-NVQSYAMTGGKTMKDDLNRMQKNGCQVVSGTPGRVLDMFKRHLLNTRNVQMLILDEADELLGESL 183
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DHH1_PICGU (ATP-dependent RNA helicase DHH1 OS=Pichia guilliermondii GN=DHH1 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 8.312e-23 Identity = 62/157 (39.49%), Postives = 91/157 (57.96%), Query Frame = 2 Query: 269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736 F +F LK ELL I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA F++ LQQ + ++ L+L TRELA Q + +L ++ V GG ++ D+++ + P I+VGTPGR+L LA F++DE DKML Sbjct: 31 FEEFGLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPALQQVKTKLNKIQVLILVPTRELALQTSQVVKTLGKHL-KLQCMVTTGGTLLR--DDVMRLDEPVHILVGTPGRVLDLAARSIADFSECPMFVMDEADKML 184
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: RH8_ORYSJ (DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica GN=Os02g0641800 PE=2 SV=2) HSP 1 Score: 107.071 bits (266), Expect = 1.086e-22 Identity = 62/157 (39.49%), Postives = 91/157 (57.96%), Query Frame = 2 Query: 269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736 F D+ LK ELL I + GFE PS +Q E IP A+ G D++ +AK+G GKTA F + L++ + + ++L TRELA Q + +L I+V V GG ++K D+++ P ++VGTPGRIL L + LK+ I+DE DK+L Sbjct: 136 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQEKNAIQVVILVPTRELALQTSQVCKELGKHL-KIQVMVTTGGTSLK--DDIIRLYQPVHLLVGTPGRILDLTKKGICILKDCSMLIMDEADKLL 289
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: IF4A_PHANO (ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria nodorum GN=TIF1 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.086e-22 Identity = 63/151 (41.72%), Postives = 88/151 (58.28%), Query Frame = 2 Query: 284 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736 LK ELLR + GFE PS +Q I I G DVI QA+SG GKTA F +STLQ+ + N AL+L TRELA QI ++ D+ GG +++ L+ + PQ+VVGTPGR+ + + + L +++ F+LDE D+ML Sbjct: 30 LKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISTLQKIDSNVKACQALILAPTRELAQQIQKVVVAIGDFM-DVACHACIGGTSVRDDMKALQ-DGPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEML 178
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: IF4A_EMENI (ATP-dependent RNA helicase eIF4A OS=Emericella nidulans GN=tif1 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.086e-22 Identity = 66/159 (41.51%), Postives = 90/159 (56.60%), Query Frame = 2 Query: 260 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736 + F LKPELLR + GFE PS +Q I + G DVI QA+SG GKTA F +S LQ+ + N AL++ TRELA QI ++ +I+ GG ++ + L+ E PQIVVGTPGRI + + + L ++ FILDE D+ML Sbjct: 47 TDSFDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQKLDPNVKACQALIVAPTRELAQQIQKVVIAIGDFM-NIQCHACIGGTAVRDDMNALR-EGPQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEML 203
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: IF4A_DROME (Eukaryotic initiation factor 4A OS=Drosophila melanogaster GN=eIF-4a PE=2 SV=3) HSP 1 Score: 107.071 bits (266), Expect = 1.086e-22 Identity = 63/156 (40.38%), Postives = 88/156 (56.41%), Query Frame = 2 Query: 269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736 F D L+ ELLR I GFE PS +Q I + G DVI QA+SG GKTA F ++ LQQ + + + AL+L TRELA QI Y+ + GG N++ +L++ C +VVGTPGR+ + K L + ++ F+LDE D+ML Sbjct: 32 FDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYM-KVHSHACIGGTNVREDARILESGC-HVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEML 185
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DDX6_CHICK (Probable ATP-dependent RNA helicase DDX6 OS=Gallus gallus GN=DDX6 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.086e-22 Identity = 60/181 (33.15%), Postives = 103/181 (56.91%), Query Frame = 2 Query: 197 PDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736 P + K + + KG + F D+ LK ELL I + G+E PS +Q E IP A+ G D++ +AK+G GK+ +++ L++ +L + A+V+ TRELA Q+ + S ++ KV GG N++ D+++ ++ +V+ TPGRIL L + +++V+ +LDE DK+L Sbjct: 80 PKDLRIKTSDVTSTKG------NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR--DDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEADKLL 252
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.418e-22 Identity = 61/157 (38.85%), Postives = 93/157 (59.24%), Query Frame = 2 Query: 269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736 F D+ LK ELL I + GFE PS +Q E IP A+ G D++ +AK+G GKTA F + L++ + + + A+++ TRELA Q + +L I+V V GG ++K D+++ P ++VGTPGRIL L + LK+ ++DE DK+L Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHL-KIQVMVTTGGTSLK--DDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLL 286
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.418e-22 Identity = 65/162 (40.12%), Postives = 92/162 (56.79%), Query Frame = 2 Query: 248 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKM 733 V +H++ F LKP+LL+ I GFE PS +Q I Q I G D I QA+SG GKTA F + LQ + N AL+L TRELA QI + + Y+ +I GG ++ LK + QIV GTPGR++ + + + LS +N++ ILDE D++ Sbjct: 22 VKVHAT-FESMNLKPDLLKGIYGYGFEAPSAIQSRAIMQIINGRDTIAQAQSGTGKTATFSIGMLQAIDTNAKDCQALILSPTRELAVQIQNVVKHLGDYM-NIHTHACIGGTHVGDDIKKLK-QGQQIVSGTPGRVVDMVKRQQLSTRNIKMLILDEADEL 180
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: EXP9_STRR6 (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=exp9 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.418e-22 Identity = 67/156 (42.95%), Postives = 89/156 (57.05%), Query Frame = 2 Query: 269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736 F + L +LL I +GF S +Q + IP A+ G DVI QA++G GKTA F L TL++ + ALV+ TRELA Q E RF +KV YGG +I+ LK+ IVVGTPGR+L L + K L L+++ ILDE D+ML Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR-SKGVKVRSVYGGSSIEKQIKALKSGA-HIVVGTPGRLLDLIKRKALKLQDIETLILDEADEML 156 The following BLAST results are available for this feature:
BLAST of CN185812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185812 ID=CN185812; Name=CN185812; organism=Citrus sinensis; type=EST; length=752bpback to top |