CN185812

Overview
NameCN185812
Unique NameCN185812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.312e-23
Identity = 68/163 (41.72%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  260 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML-ESL 745
            S  F    LK +LLR I   GFE PS +Q   I Q I G DVI QA+SG GKTA F +  LQ  +L    + ALVL  TRELA QI         Y+ +++     GG  +K   + ++    Q+V GTPGR+L + +   L+ +NV+  ILDE D++L ESL
Sbjct:   22 SPTFESMNLKDDLLRGIYGYGFEAPSAIQSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQAIDLKRKDLQALVLSPTRELASQINQVVSNLGDYM-NVQSYAMTGGKTMKDDLNRMQKNGCQVVSGTPGRVLDMFKRHLLNTRNVQMLILDEADELLGESL 183          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DHH1_PICGU (ATP-dependent RNA helicase DHH1 OS=Pichia guilliermondii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.312e-23
Identity = 62/157 (39.49%), Postives = 91/157 (57.96%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F +F LK ELL  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA F++  LQQ +    ++  L+L  TRELA Q     +    +L  ++  V  GG  ++   D+++ + P  I+VGTPGR+L LA            F++DE DKML
Sbjct:   31 FEEFGLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPALQQVKTKLNKIQVLILVPTRELALQTSQVVKTLGKHL-KLQCMVTTGGTLLR--DDVMRLDEPVHILVGTPGRVLDLAARSIADFSECPMFVMDEADKML 184          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: RH8_ORYSJ (DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica GN=Os02g0641800 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.086e-22
Identity = 62/157 (39.49%), Postives = 91/157 (57.96%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F D+ LK ELL  I + GFE PS +Q E IP A+ G D++ +AK+G GKTA F +  L++ +     +  ++L  TRELA Q     +    +L  I+V V  GG ++K   D+++   P  ++VGTPGRIL L +     LK+    I+DE DK+L
Sbjct:  136 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQEKNAIQVVILVPTRELALQTSQVCKELGKHL-KIQVMVTTGGTSLK--DDIIRLYQPVHLLVGTPGRILDLTKKGICILKDCSMLIMDEADKLL 289          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: IF4A_PHANO (ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria nodorum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.086e-22
Identity = 63/151 (41.72%), Postives = 88/151 (58.28%), Query Frame = 2
Query:  284 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            LK ELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F +STLQ+ + N     AL+L  TRELA QI         ++ D+      GG +++     L+ + PQ+VVGTPGR+  + + + L   +++ F+LDE D+ML
Sbjct:   30 LKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISTLQKIDSNVKACQALILAPTRELAQQIQKVVVAIGDFM-DVACHACIGGTSVRDDMKALQ-DGPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEML 178          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: IF4A_EMENI (ATP-dependent RNA helicase eIF4A OS=Emericella nidulans GN=tif1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.086e-22
Identity = 66/159 (41.51%), Postives = 90/159 (56.60%), Query Frame = 2
Query:  260 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            +  F    LKPELLR +   GFE PS +Q   I   + G DVI QA+SG GKTA F +S LQ+ + N     AL++  TRELA QI         ++ +I+     GG  ++   + L+ E PQIVVGTPGRI  + + + L    ++ FILDE D+ML
Sbjct:   47 TDSFDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQKLDPNVKACQALIVAPTRELAQQIQKVVIAIGDFM-NIQCHACIGGTAVRDDMNALR-EGPQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEML 203          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: IF4A_DROME (Eukaryotic initiation factor 4A OS=Drosophila melanogaster GN=eIF-4a PE=2 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 1.086e-22
Identity = 63/156 (40.38%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F D  L+ ELLR I   GFE PS +Q   I   + G DVI QA+SG GKTA F ++ LQQ + +  +  AL+L  TRELA QI         Y+  +      GG N++    +L++ C  +VVGTPGR+  +   K L  + ++ F+LDE D+ML
Sbjct:   32 FDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYM-KVHSHACIGGTNVREDARILESGC-HVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEML 185          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DDX6_CHICK (Probable ATP-dependent RNA helicase DDX6 OS=Gallus gallus GN=DDX6 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.086e-22
Identity = 60/181 (33.15%), Postives = 103/181 (56.91%), Query Frame = 2
Query:  197 PDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            P  +  K +   + KG      + F D+ LK ELL  I + G+E PS +Q E IP A+ G D++ +AK+G GK+  +++  L++ +L    + A+V+  TRELA Q+     + S ++   KV    GG N++   D+++ ++   +V+ TPGRIL L +     +++V+  +LDE DK+L
Sbjct:   80 PKDLRIKTSDVTSTKG------NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR--DDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEADKLL 252          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.418e-22
Identity = 61/157 (38.85%), Postives = 93/157 (59.24%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F D+ LK ELL  I + GFE PS +Q E IP A+ G D++ +AK+G GKTA F +  L++ + +   + A+++  TRELA Q     +    +L  I+V V  GG ++K   D+++   P  ++VGTPGRIL L +     LK+    ++DE DK+L
Sbjct:  133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHL-KIQVMVTTGGTSLK--DDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLL 286          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.418e-22
Identity = 65/162 (40.12%), Postives = 92/162 (56.79%), Query Frame = 2
Query:  248 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKM 733
            V +H++ F    LKP+LL+ I   GFE PS +Q   I Q I G D I QA+SG GKTA F +  LQ  + N     AL+L  TRELA QI +  +    Y+ +I      GG ++      LK +  QIV GTPGR++ + + + LS +N++  ILDE D++
Sbjct:   22 VKVHAT-FESMNLKPDLLKGIYGYGFEAPSAIQSRAIMQIINGRDTIAQAQSGTGKTATFSIGMLQAIDTNAKDCQALILSPTRELAVQIQNVVKHLGDYM-NIHTHACIGGTHVGDDIKKLK-QGQQIVSGTPGRVVDMVKRQQLSTRNIKMLILDEADEL 180          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: EXP9_STRR6 (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=exp9 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.418e-22
Identity = 67/156 (42.95%), Postives = 89/156 (57.05%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F +  L  +LL  I  +GF   S +Q + IP A+ G DVI QA++G GKTA F L TL++       + ALV+  TRELA Q   E  RF      +KV   YGG +I+     LK+    IVVGTPGR+L L + K L L+++   ILDE D+ML
Sbjct:    3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR-SKGVKVRSVYGGSSIEKQIKALKSGA-HIVVGTPGRLLDLIKRKALKLQDIETLILDEADEML 156          
The following BLAST results are available for this feature:
BLAST of CN185812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FAL1_VANPO8.312e-2341.72ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma... [more]
DHH1_PICGU8.312e-2339.49ATP-dependent RNA helicase DHH1 OS=Pichia guillier... [more]
RH8_ORYSJ1.086e-2239.49DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sat... [more]
IF4A_PHANO1.086e-2241.72ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria ... [more]
IF4A_EMENI1.086e-2241.51ATP-dependent RNA helicase eIF4A OS=Emericella nid... [more]
IF4A_DROME1.086e-2240.38Eukaryotic initiation factor 4A OS=Drosophila mela... [more]
DDX6_CHICK1.086e-2233.15Probable ATP-dependent RNA helicase DDX6 OS=Gallus... [more]
RH8_ARATH1.418e-2238.85DEAD-box ATP-dependent RNA helicase 8 OS=Arabidops... [more]
FAL1_PICST1.418e-2240.12ATP-dependent RNA helicase FAL1 OS=Pichia stipitis... [more]
EXP9_STRR61.418e-2242.95Probable ATP-dependent RNA helicase exp9 OS=Strept... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O12_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185812 ID=CN185812; Name=CN185812; organism=Citrus sinensis; type=EST; length=752bp
GATGGCGAATTCTCTCCACTTTCAAATCTTTTTCTCCTTTTATTTTGGCT
AATTATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCC
CAACCGTTTATTCGAATACTGGCAGGAATGGGAGAGACAAGAGACAACGA
GTACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCG
ATTCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTT
GGTATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCT
TCGTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATG
AATGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAA
TCAGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAAC
AGAGCTAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAG
AGTTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTG
CCTGATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCA
CAAAGATTTGCTGAAAAACGAATGTCCCCAAATTGTTGTCGGGACTCCTG
GAAGGATACTAGCTCTTGCTAGAGATAAAGACCTCTCTTTGAAGAATGTG
AGGCATTTTATCCTTGATGAATGCGATAAGATGCTGGAATCTCTTGACAT
GA
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