CN185812

Overview
NameCN185812
Unique NameCN185812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: UAP56_CAEEL (Spliceosome RNA helicase BAT1 homolog OS=Caenorhabditis elegans GN=hel-1 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.354e-65
Identity = 124/178 (69.66%), Postives = 146/178 (82.02%), Query Frame = 2
Query:  224 GEAAK-KG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 751
            G+A K KG Y  IHSSGFRDFLLKPE+LRAI D GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFV++TLQQ E   G+V+ + +CHTRELA+QI  E+ERFS YLP +KVAVF+GG+ IK  ++ L N+CP IVVGTPGR+LALAR   L L  V++F+LDECDKM+   DM
Sbjct:   26 GDARKTKGTYASIHSSGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADM 203          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: SUB2_PICGU (ATP-dependent RNA helicase SUB2 OS=Pichia guilliermondii GN=SUB2 PE=3 SV=3)

HSP 1 Score: 248.44 bits (633), Expect = 3.017e-65
Identity = 123/191 (64.40%), Postives = 153/191 (80.10%), Query Frame = 2
Query:  188 AQAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 751
            + AP++ A  A+ +A KKG YVGIH++GFRDFLLKPELLRAI D GFEHPSEVQ  CIPQ+ILG DV+CQAKSG+GKTAVFVLSTLQQ +  PG++T LV+CHTRELAYQI +E+ RFS Y+PD+K  VFYGG+ I    + LKN+  CP IVV TPGR+ AL  +K + L NV+ F++DECDK+LE++DM
Sbjct:   22 SNAPEAGADGADKDADKKGSYVGIHATGFRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEITTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGIPIAKDIEKLKNKDTCPHIVVATPGRLHALVEEKAIRLNNVKSFVIDECDKVLEAIDM 212          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: SUB2_ASPOR (ATP-dependent RNA helicase sub2 OS=Aspergillus oryzae GN=sub2 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.147e-64
Identity = 128/202 (63.37%), Postives = 151/202 (74.75%), Query Frame = 2
Query:  194 APDSVATKANGEAAKKG--------------YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 751
            A  + A  ANG+AAKKG              YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q E  PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG  I+   ++L N+   P IVVGTPGR+ AL RDK LSL+NV+ F+LDECDKML+ +DM
Sbjct:   21 AATTAAPAANGDAAKKGDLTVSGGRPDKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIDM 222          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: SUB2_CHAGB (ATP-dependent RNA helicase SUB2 OS=Chaetomium globosum GN=SUB2 PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 9.706e-64
Identity = 127/194 (65.46%), Postives = 149/194 (76.80%), Query Frame = 2
Query:  194 APDSVATKANGEAA-----KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 751
            AP S   K +  AA     KKG YVGIHS+GFRDFLLKPELLRAI D GFEHPSEVQ  CIPQA+LG D+ICQAKSG+GKTAVFVL+TLQQ E   G+ + LV+CHTRELA+QI +E+ RFS Y+PDIK  VFYGG  I+   ++LKN+   P I+VGTPGR+ AL RDK L L NVR F+LDECDKML+ +DM
Sbjct:   21 APASNGKKGDAAAAAQNVDKKGSYVGIHSTGFRDFLLKPELLRAIADCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEVLKNKETHPHIIVGTPGRLNALVRDKHLRLGNVRMFVLDECDKMLDQIDM 214          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: SUB2_ASPNC (ATP-dependent RNA helicase sub2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sub2 PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 9.706e-64
Identity = 124/183 (67.76%), Postives = 145/183 (79.23%), Query Frame = 2
Query:  212 TKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 751
            T + G   KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q E  PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG  I+   +LL N+   P IVVGTPGR+ AL RDK LSL+NV+ F+LDECDKML+ +DM
Sbjct:   39 TVSGGRPDKKGSYVGIHSTGFRDFLLKEELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVELLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIDM 221          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: SUB2_PICST (ATP-dependent RNA helicase SUB2 OS=Pichia stipitis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.268e-63
Identity = 121/178 (67.98%), Postives = 144/178 (80.90%), Query Frame = 2
Query:  227 EAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK--IHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 751
            EA KKG YVGIH++GFRDFLLKPELLRAI D GFEHPSEVQ  CIPQ+ILG DV+CQAKSG+GKTAVFVLSTLQQ +  PG+++ LV+CHTRELAYQI +E+ RFS Y+PD+K  VFYGG  IK  I K   K+ CP IVV TPGR+ AL  +K + L NV+ F++DECDK+LES+DM
Sbjct:   36 EADKKGSYVGIHATGFRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGTPIKRDIEKLKSKDTCPHIVVATPGRLHALVNEKAIRLSNVKSFVIDECDKVLESIDM 213          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: SUB2_COCIM (ATP-dependent RNA helicase SUB2 OS=Coccidioides immitis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.656e-63
Identity = 125/204 (61.27%), Postives = 151/204 (74.02%), Query Frame = 2
Query:  188 AQAPDSVATKANGEAAKKG--------------YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL--KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 751
            A A  + A  ANG A KKG              YVG+HS+GFRDFLLKPELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q E  PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG  ++   ++L  K+  P IVVGTPGR+ AL R+K LSL+N++ F+LDECDKML+ +DM
Sbjct:   21 AAAAATAAAAANGAAVKKGDLTVSGARADKKGSYVGVHSTGFRDFLLKPELLRAITDCGFEHPSEVQQVCIPTAILKVDVLCQAKSGLGKTAVFVLTTLNQLEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIEVLSSKDTYPNIVVGTPGRLNALVREKKLSLRNIKAFVLDECDKMLDQIDM 224          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: SUB2_ASPCL (ATP-dependent RNA helicase sub2 OS=Aspergillus clavatus GN=sub2 PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.656e-63
Identity = 125/191 (65.45%), Postives = 147/191 (76.96%), Query Frame = 2
Query:  188 AQAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 751
            AQ      T + G   KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q E  PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG  I+   ++L N+   P IVVGTPGR+ AL RDK LSL+NV+ F+LDECDKML+ +DM
Sbjct:   32 AQDKKGDLTVSGGRPDKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIDM 222          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: SUB2_LODEL (ATP-dependent RNA helicase SUB2 OS=Lodderomyces elongisporus GN=SUB2 PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.824e-63
Identity = 120/178 (67.42%), Postives = 145/178 (81.46%), Query Frame = 2
Query:  227 EAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 751
            EA KKG YVGIH++GFRDFLLKPELLRAI D GFEHPSEVQ  CIPQ+ILG DV+CQAKSG+GKTAVFVLSTLQQ +   G+++ LV+CHTRELAYQI +E+ RFS Y+PD+K  VFYGG  +K   + LKN+  CP IVV TPGR+ AL ++K + L NV+ F++DECDK+LESLDM
Sbjct:   36 EADKKGSYVGIHATGFRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVAGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGTPVKRDIEKLKNKDTCPHIVVATPGRLHALVQEKAIRLNNVKSFVIDECDKVLESLDM 213          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: SUB2_YARLI (ATP-dependent RNA helicase SUB2 OS=Yarrowia lipolytica GN=SUB2 PE=3 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 3.688e-63
Identity = 118/186 (63.44%), Postives = 145/186 (77.96%), Query Frame = 2
Query:  200 DSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 751
            ++   K      K  YVGIHS+GFRDFLLKPELLRAIVD GFEHPSEVQ  CIPQ+ILG DV+CQAK+G+GKTAVFVLSTLQQ E  PG+ + +VLCHTRELAYQI +E+ RFS YLPD+K AVFYGG  I+   +L++N+   P ++V TPGR+ AL RDK L L NV+ F++DECDK+L+ +DM
Sbjct:   36 ETTTVKEENTEQKGSYVGIHSTGFRDFLLKPELLRAIVDCGFEHPSEVQQVCIPQSILGTDVLCQAKAGVGKTAVFVLSTLQQLEPVPGECSVVVLCHTRELAYQIMNEYARFSKYLPDVKTAVFYGGSPIQKDIELIQNKETSPHVIVATPGRLHALVRDKHLRLGNVKTFVIDECDKVLDQIDM 221          
The following BLAST results are available for this feature:
BLAST of CN185812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
UAP56_CAEEL1.354e-6569.66Spliceosome RNA helicase BAT1 homolog OS=Caenorhab... [more]
SUB2_PICGU3.017e-6564.40ATP-dependent RNA helicase SUB2 OS=Pichia guillier... [more]
SUB2_ASPOR1.147e-6463.37ATP-dependent RNA helicase sub2 OS=Aspergillus ory... [more]
SUB2_CHAGB9.706e-6465.46ATP-dependent RNA helicase SUB2 OS=Chaetomium glob... [more]
SUB2_ASPNC9.706e-6467.76ATP-dependent RNA helicase sub2 OS=Aspergillus nig... [more]
SUB2_PICST1.268e-6367.98ATP-dependent RNA helicase SUB2 OS=Pichia stipitis... [more]
SUB2_COCIM1.656e-6361.27ATP-dependent RNA helicase SUB2 OS=Coccidioides im... [more]
SUB2_ASPCL1.656e-6365.45ATP-dependent RNA helicase sub2 OS=Aspergillus cla... [more]
SUB2_LODEL2.824e-6367.42ATP-dependent RNA helicase SUB2 OS=Lodderomyces el... [more]
SUB2_YARLI3.688e-6363.44ATP-dependent RNA helicase SUB2 OS=Yarrowia lipoly... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O12_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185812 ID=CN185812; Name=CN185812; organism=Citrus sinensis; type=EST; length=752bp
GATGGCGAATTCTCTCCACTTTCAAATCTTTTTCTCCTTTTATTTTGGCT
AATTATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCC
CAACCGTTTATTCGAATACTGGCAGGAATGGGAGAGACAAGAGACAACGA
GTACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCG
ATTCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTT
GGTATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCT
TCGTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATG
AATGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAA
TCAGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAAC
AGAGCTAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAG
AGTTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTG
CCTGATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCA
CAAAGATTTGCTGAAAAACGAATGTCCCCAAATTGTTGTCGGGACTCCTG
GAAGGATACTAGCTCTTGCTAGAGATAAAGACCTCTCTTTGAAGAATGTG
AGGCATTTTATCCTTGATGAATGCGATAAGATGCTGGAATCTCTTGACAT
GA
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