CN185812

Overview
NameCN185812
Unique NameCN185812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: SUB22_VANPO (ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SUB2-2 PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.713e-60
Identity = 117/184 (63.59%), Postives = 145/184 (78.80%), Query Frame = 2
Query:  209 ATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 751
            A  A  ++ KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ   IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ +  PG+V+ +V+C+ RELAYQI +E+ RFS Y+PD+K AVFYGG  I    +LLKN+   P IVV TPGR+ AL RDK + L +V++F++DECDK+LE LDM
Sbjct:   39 AEGATTDSEKKGSYVGIHSTGFKDFLLKPELARAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPITKDAELLKNKETAPHIVVATPGRLKALVRDKLIDLSHVKNFVIDECDKVLEELDM 222          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: SUB2_ASHGO (ATP-dependent RNA helicase SUB2 OS=Ashbya gossypii GN=SUB2 PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.922e-60
Identity = 121/199 (60.80%), Postives = 152/199 (76.38%), Query Frame = 2
Query:  191 QAPDSVATKA--NGEAA-------KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 751
            Q  ++ AT+   NGE A       KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ   IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ +  PG+V+ +VLC+ RELAYQI +E+ RFS Y+PD+K AVFYGG + +   +LLKN+   P IVV TPGR+ AL RD ++ L +V++F++DECDK+LE LDM
Sbjct:   20 QVDNTKATEVAGNGEEAADGKDGDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTDTRKDIELLKNKDTAPHIVVATPGRLKALVRDNNIDLSHVKNFVIDECDKVLEELDM 218          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: SUB2_PHANO (ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria nodorum GN=SUB2 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.450e-59
Identity = 121/186 (65.05%), Postives = 144/186 (77.42%), Query Frame = 2
Query:  209 ATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTE--LNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 751
            A  A+GE  KKG YVGIHS+GFRDFLLK EL+RAI D GFEHPSEVQ   IPQAILG DV+CQAKSG+GKTAVFVL+TLQQ +    PG  + LV+CHTRELAYQI +E+ RF+ +LPD+KV VFYGG  +    +LL N+   P I+VGTPGRI AL RD+ L L N++HF+LDECDKML+  DM
Sbjct:   35 APDASGE--KKGSYVGIHSTGFRDFLLKDELVRAITDCGFEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEPGVASILVMCHTRELAYQIRNEYNRFAKFLPDVKVGVFYGGTPVAKDIELLSNKDTHPHIIVGTPGRINALVRDRHLRLANLKHFVLDECDKMLDQPDM 218          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: SUB2_YEAST (ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae GN=SUB2 PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.894e-59
Identity = 114/175 (65.14%), Postives = 140/175 (80.00%), Query Frame = 2
Query:  236 KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 751
            KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ   IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ +  PG+V  +V+C+ RELAYQI +E+ RFS Y+PD+K AVFYGG  I    +LLKN+   P IVV TPGR+ AL R+K + L +V++F++DECDK+LE LDM
Sbjct:   52 KKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELDM 226          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: SUB2_YEAS7 (ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae (strain YJM789) GN=SUB2 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.894e-59
Identity = 114/175 (65.14%), Postives = 140/175 (80.00%), Query Frame = 2
Query:  236 KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 751
            KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ   IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ +  PG+V  +V+C+ RELAYQI +E+ RFS Y+PD+K AVFYGG  I    +LLKN+   P IVV TPGR+ AL R+K + L +V++F++DECDK+LE LDM
Sbjct:   52 KKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELDM 226          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: SUB2_KLULA (ATP-dependent RNA helicase SUB2 OS=Kluyveromyces lactis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.894e-59
Identity = 119/196 (60.71%), Postives = 146/196 (74.49%), Query Frame = 2
Query:  200 DSVATKANGE---------AAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL--KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 751
            D+ AT+ N E         + KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ   IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ +   G+V+ +VLC+ RELAYQI +E+ RFS Y+PD+K AVFYGG   K   DLL  K   P I+V TPGR+ AL RDK + L +V++F++DECDK+LE LDM
Sbjct:   22 DNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDM 217          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DHH1_YEAST (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae GN=DHH1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.239e-26
Identity = 70/157 (44.59%), Postives = 94/157 (59.87%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F DF LK ELL  I ++GFE PS +Q E IP AI G D++ +AK+G GKTA FV+ TL++ +    ++ AL++  TRELA Q          +   I   V  GG N++   D+L+ NE   I+VGTPGR+L LA  K   L +   FI+DE DKML
Sbjct:   48 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLR--DDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKML 201          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DHH1_YEAS7 (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.239e-26
Identity = 70/157 (44.59%), Postives = 94/157 (59.87%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F DF LK ELL  I ++GFE PS +Q E IP AI G D++ +AK+G GKTA FV+ TL++ +    ++ AL++  TRELA Q          +   I   V  GG N++   D+L+ NE   I+VGTPGR+L LA  K   L +   FI+DE DKML
Sbjct:   48 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLR--DDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKML 201          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DHH1_YARLI (ATP-dependent RNA helicase DHH1 OS=Yarrowia lipolytica GN=DHH1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.239e-26
Identity = 68/159 (42.77%), Postives = 96/159 (60.38%), Query Frame = 2
Query:  263 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            +GF DF LK ELL  I ++GFE+PS +Q E IP A+ G D++ +AK+G GKTA FV+  LQQ      ++ AL++  TRELA Q     +    +L  IKV V  GG N++   D+++  +   ++VGTPGR+L LA      L     FI+DE DK+L
Sbjct:   28 TGFEDFFLKRELLMGIFEAGFENPSPIQEEAIPIALAGRDILARAKNGTGKTAAFVIPALQQVNPKVNKIQALIMVPTRELALQTSQVCKTLGKHL-GIKVMVTTGGTNLR--DDIMRLEDTVHVLVGTPGRVLDLAGKGVADLSESPMFIMDEADKLL 183          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DHH1_VANPO (ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.618e-26
Identity = 69/157 (43.95%), Postives = 93/157 (59.24%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F DF LK ELL  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++ +    ++ AL++  TRELA Q          +   I   V  GG N++   D+L+ NE   I+VGTPGR+L LA  K   L     FI+DE DKML
Sbjct:   36 FEDFYLKRELLMGIFEAGFEKPSPIQEESIPVALAGRDILARAKNGTGKTAAFVIPTLEKVKSKHNKIQALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLR--DDILRLNETVHILVGTPGRVLDLASRKVADLSECNLFIMDEADKML 189          
The following BLAST results are available for this feature:
BLAST of CN185812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUB22_VANPO1.713e-6063.59ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozy... [more]
SUB2_ASHGO2.922e-6060.80ATP-dependent RNA helicase SUB2 OS=Ashbya gossypii... [more]
SUB2_PHANO1.450e-5965.05ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria n... [more]
SUB2_YEAST1.894e-5965.14ATP-dependent RNA helicase SUB2 OS=Saccharomyces c... [more]
SUB2_YEAS71.894e-5965.14ATP-dependent RNA helicase SUB2 OS=Saccharomyces c... [more]
SUB2_KLULA1.894e-5960.71ATP-dependent RNA helicase SUB2 OS=Kluyveromyces l... [more]
DHH1_YEAST1.239e-2644.59ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
DHH1_YEAS71.239e-2644.59ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
DHH1_YARLI1.239e-2642.77ATP-dependent RNA helicase DHH1 OS=Yarrowia lipoly... [more]
DHH1_VANPO1.618e-2643.95ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O12_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185812 ID=CN185812; Name=CN185812; organism=Citrus sinensis; type=EST; length=752bp
GATGGCGAATTCTCTCCACTTTCAAATCTTTTTCTCCTTTTATTTTGGCT
AATTATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCC
CAACCGTTTATTCGAATACTGGCAGGAATGGGAGAGACAAGAGACAACGA
GTACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCG
ATTCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTT
GGTATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCT
TCGTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATG
AATGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAA
TCAGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAAC
AGAGCTAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAG
AGTTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTG
CCTGATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCA
CAAAGATTTGCTGAAAAACGAATGTCCCCAAATTGTTGTCGGGACTCCTG
GAAGGATACTAGCTCTTGCTAGAGATAAAGACCTCTCTTTGAAGAATGTG
AGGCATTTTATCCTTGATGAATGCGATAAGATGCTGGAATCTCTTGACAT
GA
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