CN185812
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: SUB22_VANPO (ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SUB2-2 PE=3 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 1.713e-60 Identity = 117/184 (63.59%), Postives = 145/184 (78.80%), Query Frame = 2 Query: 209 ATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 751 A A ++ KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ + PG+V+ +V+C+ RELAYQI +E+ RFS Y+PD+K AVFYGG I +LLKN+ P IVV TPGR+ AL RDK + L +V++F++DECDK+LE LDM Sbjct: 39 AEGATTDSEKKGSYVGIHSTGFKDFLLKPELARAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPITKDAELLKNKETAPHIVVATPGRLKALVRDKLIDLSHVKNFVIDECDKVLEELDM 222
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: SUB2_ASHGO (ATP-dependent RNA helicase SUB2 OS=Ashbya gossypii GN=SUB2 PE=3 SV=1) HSP 1 Score: 231.876 bits (590), Expect = 2.922e-60 Identity = 121/199 (60.80%), Postives = 152/199 (76.38%), Query Frame = 2 Query: 191 QAPDSVATKA--NGEAA-------KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 751 Q ++ AT+ NGE A KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ + PG+V+ +VLC+ RELAYQI +E+ RFS Y+PD+K AVFYGG + + +LLKN+ P IVV TPGR+ AL RD ++ L +V++F++DECDK+LE LDM Sbjct: 20 QVDNTKATEVAGNGEEAADGKDGDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTDTRKDIELLKNKDTAPHIVVATPGRLKALVRDNNIDLSHVKNFVIDECDKVLEELDM 218
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: SUB2_PHANO (ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria nodorum GN=SUB2 PE=3 SV=1) HSP 1 Score: 229.565 bits (584), Expect = 1.450e-59 Identity = 121/186 (65.05%), Postives = 144/186 (77.42%), Query Frame = 2 Query: 209 ATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTE--LNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 751 A A+GE KKG YVGIHS+GFRDFLLK EL+RAI D GFEHPSEVQ IPQAILG DV+CQAKSG+GKTAVFVL+TLQQ + PG + LV+CHTRELAYQI +E+ RF+ +LPD+KV VFYGG + +LL N+ P I+VGTPGRI AL RD+ L L N++HF+LDECDKML+ DM Sbjct: 35 APDASGE--KKGSYVGIHSTGFRDFLLKDELVRAITDCGFEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEPGVASILVMCHTRELAYQIRNEYNRFAKFLPDVKVGVFYGGTPVAKDIELLSNKDTHPHIIVGTPGRINALVRDRHLRLANLKHFVLDECDKMLDQPDM 218
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: SUB2_YEAST (ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae GN=SUB2 PE=1 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 1.894e-59 Identity = 114/175 (65.14%), Postives = 140/175 (80.00%), Query Frame = 2 Query: 236 KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 751 KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ + PG+V +V+C+ RELAYQI +E+ RFS Y+PD+K AVFYGG I +LLKN+ P IVV TPGR+ AL R+K + L +V++F++DECDK+LE LDM Sbjct: 52 KKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELDM 226
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: SUB2_YEAS7 (ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae (strain YJM789) GN=SUB2 PE=3 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 1.894e-59 Identity = 114/175 (65.14%), Postives = 140/175 (80.00%), Query Frame = 2 Query: 236 KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 751 KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ + PG+V +V+C+ RELAYQI +E+ RFS Y+PD+K AVFYGG I +LLKN+ P IVV TPGR+ AL R+K + L +V++F++DECDK+LE LDM Sbjct: 52 KKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELDM 226
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: SUB2_KLULA (ATP-dependent RNA helicase SUB2 OS=Kluyveromyces lactis GN=SUB2 PE=3 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 1.894e-59 Identity = 119/196 (60.71%), Postives = 146/196 (74.49%), Query Frame = 2 Query: 200 DSVATKANGE---------AAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL--KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 751 D+ AT+ N E + KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ + G+V+ +VLC+ RELAYQI +E+ RFS Y+PD+K AVFYGG K DLL K P I+V TPGR+ AL RDK + L +V++F++DECDK+LE LDM Sbjct: 22 DNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDM 217
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DHH1_YEAST (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae GN=DHH1 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.239e-26 Identity = 70/157 (44.59%), Postives = 94/157 (59.87%), Query Frame = 2 Query: 269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736 F DF LK ELL I ++GFE PS +Q E IP AI G D++ +AK+G GKTA FV+ TL++ + ++ AL++ TRELA Q + I V GG N++ D+L+ NE I+VGTPGR+L LA K L + FI+DE DKML Sbjct: 48 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLR--DDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKML 201
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DHH1_YEAS7 (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DHH1 PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.239e-26 Identity = 70/157 (44.59%), Postives = 94/157 (59.87%), Query Frame = 2 Query: 269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736 F DF LK ELL I ++GFE PS +Q E IP AI G D++ +AK+G GKTA FV+ TL++ + ++ AL++ TRELA Q + I V GG N++ D+L+ NE I+VGTPGR+L LA K L + FI+DE DKML Sbjct: 48 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLR--DDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKML 201
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DHH1_YARLI (ATP-dependent RNA helicase DHH1 OS=Yarrowia lipolytica GN=DHH1 PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.239e-26 Identity = 68/159 (42.77%), Postives = 96/159 (60.38%), Query Frame = 2 Query: 263 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736 +GF DF LK ELL I ++GFE+PS +Q E IP A+ G D++ +AK+G GKTA FV+ LQQ ++ AL++ TRELA Q + +L IKV V GG N++ D+++ + ++VGTPGR+L LA L FI+DE DK+L Sbjct: 28 TGFEDFFLKRELLMGIFEAGFENPSPIQEEAIPIALAGRDILARAKNGTGKTAAFVIPALQQVNPKVNKIQALIMVPTRELALQTSQVCKTLGKHL-GIKVMVTTGGTNLR--DDIMRLEDTVHVLVGTPGRVLDLAGKGVADLSESPMFIMDEADKLL 183
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DHH1_VANPO (ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DHH1 PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.618e-26 Identity = 69/157 (43.95%), Postives = 93/157 (59.24%), Query Frame = 2 Query: 269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736 F DF LK ELL I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++ + ++ AL++ TRELA Q + I V GG N++ D+L+ NE I+VGTPGR+L LA K L FI+DE DKML Sbjct: 36 FEDFYLKRELLMGIFEAGFEKPSPIQEESIPVALAGRDILARAKNGTGKTAAFVIPTLEKVKSKHNKIQALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLR--DDILRLNETVHILVGTPGRVLDLASRKVADLSECNLFIMDEADKML 189 The following BLAST results are available for this feature:
BLAST of CN185812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185812 ID=CN185812; Name=CN185812; organism=Citrus sinensis; type=EST; length=752bpback to top |