CN185812

Overview
NameCN185812
Unique NameCN185812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DBP4_ENCCU (ATP-dependent RNA helicase DBP4 OS=Encephalitozoon cuniculi GN=DBP4 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.740e-15
Identity = 59/162 (36.42%), Postives = 87/162 (53.70%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ-TELNPG---QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKMLE 739
            F D  +   + + + ++GF    EVQ + IP A+ G D+I  +++G GKT  F++ TLQ+   L  G    +  LV+  TRELA QI     R + Y   +   +  GG  ++   +LLK     I+V TPGR+L  L  +  LS  NV+  ILDE DKM+E
Sbjct:    6 FEDLKIDQRIEKGLRENGFVSMKEVQQKVIPMALEGHDIIGSSQTGTGKTLAFLVPTLQRLVSLGWGGGDGLGCLVITPTRELALQIFDVLSRIAKYTV-LSTGLIMGG--LEAEDELLKVNQMNILVCTPGRLLQHLQENPYLSTANVQILILDEADKMIE 164          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: RHLB_VIBPA (ATP-dependent RNA helicase rhlB OS=Vibrio parahaemolyticus GN=rhlB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 52/165 (31.52%), Postives = 87/165 (52.73%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF-------VLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 739
            F D  L+P++   +   GFE+ + +Q   +P  + G D+  QA++G GKT  F       +L+T +     P Q  A+++  TRELA QI ++ E        +K A+ YGG +    K L K  +   I++GT GRI+   + +  +L N++  +LDE D+M +
Sbjct:   11 FADLGLQPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPEHEGRQPTQPRAIIMAPTRELAIQIFNDAEPLIA-STGLKAALAYGGES--YDKQLAKLQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFD 172          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: PRP5_CANAL (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Candida albicans GN=PRP5 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 57/148 (38.51%), Postives = 82/148 (55.41%), Query Frame = 2
Query:  323 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL------QQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI---LALARDKDLSLKNVRHFILDECDKMLE 739
            FE PS +Q + +P  + G DVI  AK+G GKT  +VL  L      Q ++ N G +  L+L  TRELA QI  E   F+    +++V   YGG +I+   + LK    +I+VGTPGR+   LA    + L+LK     +LDE D+M +
Sbjct:  314 FEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKDNQGPI-GLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGV-EIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFD 459          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DDX3_DROME (ATP-dependent RNA helicase bel OS=Drosophila melanogaster GN=bel PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 58/174 (33.33%), Postives = 87/174 (50.00%), Query Frame = 2
Query:  263 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQT----ELNPGQVT-----------ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 739
            + F D  L   +   +  + ++ P+ VQ   IP  I G D++  A++G GKTA F++  L Q      + P Q T            LVL  TRELA QI  E ++F+ Y   ++ AV YGG N       L   C  ++V TPGR+  +     + L+N+R  +LDE D+ML+
Sbjct:  295 TSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFA-YRSRMRPAVLYGGNNTSEQMRELDRGC-HLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLD 466          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DBP3_ASPOR (ATP-dependent RNA helicase dbp3 OS=Aspergillus oryzae GN=dbp3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 52/147 (35.37%), Postives = 81/147 (55.10%), Query Frame = 2
Query:  317 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ------TELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 739
            S F+ P+ +Q    P    G DVI  A++G GKT  F L  L++      T+  P +  A+++  TRELA QI  +  +FS  +  ++VA  +GGV  +  ++ LK     +VV TPGR+  L  D  + L  V++ +LDE D+ML+
Sbjct:   98 SSFKSPTSIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKIQDSAMTKQKPYRPLAVIISPTRELAMQIYDQLLKFSGSV-GVRVACVFGGVRKEEQREALKTA--GVVVATPGRLKDLQNDGSVDLGKVKYLVLDEADRMLD 241          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DBP3_ASPFU (ATP-dependent RNA helicase dbp3 OS=Aspergillus fumigatus GN=dbp3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 54/148 (36.49%), Postives = 79/148 (53.38%), Query Frame = 2
Query:  317 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQV-------TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 739
            S F  P+ +Q    P    G DVI  A++G GKT  F L  +++  L+ G+V        A+++  TRELA QI  +  +F   + DI+V   YGGV     ++ LK     IVV TPGR+  L  D  + L  V++ +LDE D+ML+
Sbjct:  103 SSFSSPTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCIKKI-LDSGKVKRKHARPAAVIISPTRELAMQIYDQLSKFGASV-DIRVTCIYGGVKKDEQREALKTAA--IVVATPGRLKDLKDDGSVDLGKVKYLVLDEADRMLD 246          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DBP10_VANPO (ATP-dependent RNA helicase DBP10 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP10 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 51/166 (30.72%), Postives = 88/166 (53.01%), Query Frame = 2
Query:  257 HSSG-FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQV--TALVLCHTRELAYQICHEFERFS--TYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 739
            H  G F  F     +L  +   GF  P+ +Q + IP  +   D++  A++G GKTA FVL  +++ + +  ++   A++L  +RELA Q    F+ FS  T+L  +   +  GG +++    ++ +  P ++V TPGR L L  +  L LK V + + DE D++ E
Sbjct:  118 HKKGSFPSFGFSKLILSNVHKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKSHSSKIGARAVILSPSRELALQTHRVFKEFSKGTHLRSV---LLTGGDSLEDQFSMMMSN-PDVIVATPGRFLHLKVEMSLDLKTVEYVVFDEADRLFE 279          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DBP10_ASHGO (ATP-dependent RNA helicase DBP10 OS=Ashbya gossypii GN=DBP10 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 49/171 (28.65%), Postives = 91/171 (53.22%), Query Frame = 2
Query:  233 AKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQV--TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 739
            AKKG        F  F L   +L  I   GF  P+ +Q + IP  +   D++  A++G GKTA FVL  +++ +++  ++   A++L  +RELA Q    F+ F+    +++  +  GG  ++    ++ +  P +++ TPGR L L  + +L L ++ + + DE D++ E
Sbjct:  117 AKKG-------SFASFGLSKFILGNISRKGFRQPTPIQRKTIPLILQQRDIVGMARTGSGKTAAFVLPLIEKLKMHSAKIGARAMILSPSRELAMQTHKVFKEFAKG-SNLRSVLLTGGDGLEDQFSMMMSN-PDVIIATPGRFLHLKVEMNLDLHSIEYVVFDEADRLFE 278          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: CSHB_BACSU (DEAD-box ATP-dependent RNA helicase cshB OS=Bacillus subtilis GN=cshB PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 53/159 (33.33%), Postives = 84/159 (52.83%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFS--TYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 739
            F  + LKP ++ A+   GF  P+++Q   IP  +    VI Q+++G GKT  ++L  L + +     V  ++   TRELA QI  E  + +       I+   F GG + +   D LK + P +VVGTPGRI  L +++ LS+      ++DE D ML+
Sbjct:    6 FELYELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNKIDPAKDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQ-PHLVVGTPGRIADLIKEQALSVHKAESLVIDEADLMLD 163          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: ROK1_YEAST (ATP-dependent RNA helicase ROK1 OS=Saccharomyces cerevisiae GN=ROK1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.379e-15
Identity = 46/161 (28.57%), Postives = 85/161 (52.80%), Query Frame = 2
Query:  278 FLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ--TELNPGQVTALVLCHTRELAYQICHE-----FERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 739
            F     LL  ++++GF  P+ +Q ECIP A+   DV+    +G GKT  F++  +QQ   +     +  L++  T+ELA QI  E     ++ F      ++VA+    +  K+   ++ ++   I++ TP R++ + +++ L L  V+H I DE DK+ +
Sbjct:  127 FSFDKRLLNNLIENGFTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQIIDDKQTAGLKGLIISPTKELANQIFIECFKLSYKIFLEKKRPLQVALLSKSLGAKLKNKVVSDKKYDIIISTPLRLIDVVKNEALDLSKVKHLIFDEADKLFD 287          
The following BLAST results are available for this feature:
BLAST of CN185812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP4_ENCCU3.740e-1536.42ATP-dependent RNA helicase DBP4 OS=Encephalitozoon... [more]
RHLB_VIBPA4.884e-1531.52ATP-dependent RNA helicase rhlB OS=Vibrio parahaem... [more]
PRP5_CANAL4.884e-1538.51Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
DDX3_DROME4.884e-1533.33ATP-dependent RNA helicase bel OS=Drosophila melan... [more]
DBP3_ASPOR4.884e-1535.37ATP-dependent RNA helicase dbp3 OS=Aspergillus ory... [more]
DBP3_ASPFU4.884e-1536.49ATP-dependent RNA helicase dbp3 OS=Aspergillus fum... [more]
DBP10_VANPO4.884e-1530.72ATP-dependent RNA helicase DBP10 OS=Vanderwaltozym... [more]
DBP10_ASHGO4.884e-1528.65ATP-dependent RNA helicase DBP10 OS=Ashbya gossypi... [more]
CSHB_BACSU4.884e-1533.33DEAD-box ATP-dependent RNA helicase cshB OS=Bacill... [more]
ROK1_YEAST6.379e-1528.57ATP-dependent RNA helicase ROK1 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O12_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185812 ID=CN185812; Name=CN185812; organism=Citrus sinensis; type=EST; length=752bp
GATGGCGAATTCTCTCCACTTTCAAATCTTTTTCTCCTTTTATTTTGGCT
AATTATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCC
CAACCGTTTATTCGAATACTGGCAGGAATGGGAGAGACAAGAGACAACGA
GTACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCG
ATTCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTT
GGTATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCT
TCGTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATG
AATGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAA
TCAGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAAC
AGAGCTAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAG
AGTTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTG
CCTGATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCA
CAAAGATTTGCTGAAAAACGAATGTCCCCAAATTGTTGTCGGGACTCCTG
GAAGGATACTAGCTCTTGCTAGAGATAAAGACCTCTCTTTGAAGAATGTG
AGGCATTTTATCCTTGATGAATGCGATAAGATGCTGGAATCTCTTGACAT
GA
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