CN185812

Overview
NameCN185812
Unique NameCN185812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DHH1_CANGA (ATP-dependent RNA helicase DHH1 OS=Candida glabrata GN=DHH1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.761e-26
Identity = 67/159 (42.14%), Postives = 94/159 (59.12%), Query Frame = 2
Query:  263 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            + F DF LK ELL  I ++GFE PS +Q E IP AI G D++ +AK+G GKTA FV+ TL++ +    ++ AL++  TRELA Q          +   +   V  GG N++   D+L+ NE   ++VGTPGR+L LA  K   L     F++DE DKML
Sbjct:   31 NSFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKIKPKLNKIQALIMVPTRELALQTSQVIRTLGRHC-GVSCMVTTGGTNLR--DDILRLNETVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKML 186          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNE (ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.150e-26
Identity = 64/159 (40.25%), Postives = 95/159 (59.75%), Query Frame = 2
Query:  263 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            S F DF L+ ELL  I  +GFE PS +Q + IP A+ G D++ +AK+G GKTA F++ TL +   +   + AL+L  TRELA Q     +    ++P+++V +  GG  ++   D+L+ + P  I+VGTPGRIL L      SL     F++DE DK+L
Sbjct:   36 SRFEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLR--DDILRLQQPVHILVGTPGRILDLGSKGIASLNKCGVFVMDEADKLL 192          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: IF4A2_CHICK (Eukaryotic initiation factor 4A-II OS=Gallus gallus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.032e-26
Identity = 71/156 (45.51%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F D  LK  LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E++  +  ALVL  TRELA QI         Y+     A   GG N++     L+ E P IVVGTPGR+  +   + LS K ++ F+LDE D+ML
Sbjct:   35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIDLKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML 189          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DHH1_KLULA (ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.032e-26
Identity = 68/157 (43.31%), Postives = 93/157 (59.24%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F DF LK ELL  I ++GFE PS +Q E IP AI G D++ +AK+G GKTA FV+ TL++ +    ++ AL++  TRELA Q          +   I   V  GG N++   D+++ NE   I+VGTPGR+L LA  +   L     FI+DE DKML
Sbjct:   38 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAIAGKDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLR--DDIMRLNEPVHILVGTPGRVLDLASRRVTDLSECHLFIMDEADKML 191          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: IF4A2_RAT (Eukaryotic initiation factor 4A-II OS=Rattus norvegicus GN=Eif4a2 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.370e-25
Identity = 71/156 (45.51%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F D  LK  LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E+   +  ALVL  TRELA QI         Y+     A   GG N++     L+ E P IVVGTPGR+  +   + LS K ++ F+LDE D+ML
Sbjct:   35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML 189          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: IF4A2_PONAB (Eukaryotic initiation factor 4A-II OS=Pongo abelii GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.370e-25
Identity = 71/156 (45.51%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F D  LK  LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E+   +  ALVL  TRELA QI         Y+     A   GG N++     L+ E P IVVGTPGR+  +   + LS K ++ F+LDE D+ML
Sbjct:   35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML 189          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: IF4A2_MOUSE (Eukaryotic initiation factor 4A-II OS=Mus musculus GN=Eif4a2 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.370e-25
Identity = 71/156 (45.51%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F D  LK  LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E+   +  ALVL  TRELA QI         Y+     A   GG N++     L+ E P IVVGTPGR+  +   + LS K ++ F+LDE D+ML
Sbjct:   35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML 189          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: IF4A2_HUMAN (Eukaryotic initiation factor 4A-II OS=Homo sapiens GN=EIF4A2 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.370e-25
Identity = 71/156 (45.51%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F D  LK  LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E+   +  ALVL  TRELA QI         Y+     A   GG N++     L+ E P IVVGTPGR+  +   + LS K ++ F+LDE D+ML
Sbjct:   35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML 189          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: IF4A2_BOVIN (Eukaryotic initiation factor 4A-II OS=Bos taurus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.370e-25
Identity = 71/156 (45.51%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F D  LK  LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E+   +  ALVL  TRELA QI         Y+     A   GG N++     L+ E P IVVGTPGR+  +   + LS K ++ F+LDE D+ML
Sbjct:   35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML 189          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNV (ATP-dependent RNA helicase VAD1 OS=Cryptococcus neoformans var. grubii GN=VAD1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.789e-25
Identity = 63/159 (39.62%), Postives = 94/159 (59.12%), Query Frame = 2
Query:  263 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            S F DF L+ ELL  I  +GFE PS +Q + IP A+ G D++ +AK+G GKTA F++ TL +   +   + AL+L  TRELA Q     +    ++P+++V +  GG  ++   D+L+ + P  I+VGTPGRIL L       L     F++DE DK+L
Sbjct:   36 SRFEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLR--DDILRLQQPVHILVGTPGRILDLGSKGIAGLNKCGIFVMDEADKLL 192          
The following BLAST results are available for this feature:
BLAST of CN185812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DHH1_CANGA2.761e-2642.14ATP-dependent RNA helicase DHH1 OS=Candida glabrat... [more]
DHH1_CRYNE6.150e-2640.25ATP-dependent RNA helicase DHH1 OS=Cryptococcus ne... [more]
IF4A2_CHICK8.032e-2645.51Eukaryotic initiation factor 4A-II OS=Gallus gallu... [more]
DHH1_KLULA8.032e-2643.31ATP-dependent RNA helicase DHH1 OS=Kluyveromyces l... [more]
IF4A2_RAT1.370e-2545.51Eukaryotic initiation factor 4A-II OS=Rattus norve... [more]
IF4A2_PONAB1.370e-2545.51Eukaryotic initiation factor 4A-II OS=Pongo abelii... [more]
IF4A2_MOUSE1.370e-2545.51Eukaryotic initiation factor 4A-II OS=Mus musculus... [more]
IF4A2_HUMAN1.370e-2545.51Eukaryotic initiation factor 4A-II OS=Homo sapiens... [more]
IF4A2_BOVIN1.370e-2545.51Eukaryotic initiation factor 4A-II OS=Bos taurus G... [more]
DHH1_CRYNV1.789e-2539.62ATP-dependent RNA helicase VAD1 OS=Cryptococcus ne... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O12_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185812 ID=CN185812; Name=CN185812; organism=Citrus sinensis; type=EST; length=752bp
GATGGCGAATTCTCTCCACTTTCAAATCTTTTTCTCCTTTTATTTTGGCT
AATTATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCC
CAACCGTTTATTCGAATACTGGCAGGAATGGGAGAGACAAGAGACAACGA
GTACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCG
ATTCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTT
GGTATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCT
TCGTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATG
AATGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAA
TCAGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAAC
AGAGCTAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAG
AGTTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTG
CCTGATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCA
CAAAGATTTGCTGAAAAACGAATGTCCCCAAATTGTTGTCGGGACTCCTG
GAAGGATACTAGCTCTTGCTAGAGATAAAGACCTCTCTTTGAAGAATGTG
AGGCATTTTATCCTTGATGAATGCGATAAGATGCTGGAATCTCTTGACAT
GA
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