CN185812

Overview
NameCN185812
Unique NameCN185812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: IF4A1_RABIT (Eukaryotic initiation factor 4A-I (Fragment) OS=Oryctolagus cuniculus GN=EIF4A1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.337e-25
Identity = 69/156 (44.23%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F D  L   LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ EL+     ALVL  TRELA QI         Y+         GG N++     L+ E P I+VGTPGR+  +   + LS K ++ F+LDE D+ML
Sbjct:   26 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML 180          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: IF4A1_PANTR (Eukaryotic initiation factor 4A-I OS=Pan troglodytes GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.337e-25
Identity = 69/156 (44.23%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F D  L   LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ EL+     ALVL  TRELA QI         Y+         GG N++     L+ E P I+VGTPGR+  +   + LS K ++ F+LDE D+ML
Sbjct:   34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML 188          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: IF4A1_MOUSE (Eukaryotic initiation factor 4A-I OS=Mus musculus GN=Eif4a1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.337e-25
Identity = 69/156 (44.23%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F D  L   LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ EL+     ALVL  TRELA QI         Y+         GG N++     L+ E P I+VGTPGR+  +   + LS K ++ F+LDE D+ML
Sbjct:   34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML 188          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: IF4A1_MACFA (Eukaryotic initiation factor 4A-I OS=Macaca fascicularis GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.337e-25
Identity = 69/156 (44.23%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F D  L   LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ EL+     ALVL  TRELA QI         Y+         GG N++     L+ E P I+VGTPGR+  +   + LS K ++ F+LDE D+ML
Sbjct:   34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML 188          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: IF4A1_HUMAN (Eukaryotic initiation factor 4A-I OS=Homo sapiens GN=EIF4A1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.337e-25
Identity = 69/156 (44.23%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F D  L   LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ EL+     ALVL  TRELA QI         Y+         GG N++     L+ E P I+VGTPGR+  +   + LS K ++ F+LDE D+ML
Sbjct:   34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML 188          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: IF4A1_BOVIN (Eukaryotic initiation factor 4A-I OS=Bos taurus GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.337e-25
Identity = 69/156 (44.23%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F D  L   LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ EL+     ALVL  TRELA QI         Y+         GG N++     L+ E P I+VGTPGR+  +   + LS K ++ F+LDE D+ML
Sbjct:   34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML 188          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DHH1_PICST (ATP-dependent RNA helicase DHH1 OS=Pichia stipitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.337e-25
Identity = 68/157 (43.31%), Postives = 94/157 (59.87%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F DF LK ELL  I ++GFE PS +Q E IP A+ G DV+ +AK+G GKTA F++ +LQQ +    ++ AL+L  TRELA Q          +L  I+  V  GG ++K   D+L+ N+   ++VGTPGR+L LA      L     F++DE DKML
Sbjct:   32 FEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDVLARAKNGTGKTASFIIPSLQQIKPKLNKIQALILVPTRELALQTSQVVRTLGKHL-GIQCMVTTGGTSLK--DDILRLNDPVHVLVGTPGRVLDLAARSVADLSECPLFVMDEADKML 185          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DHH1_DEBHA (ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii GN=DHH1 PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.337e-25
Identity = 68/157 (43.31%), Postives = 93/157 (59.24%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F DF LK ELL  I ++GFE PS VQ E IP A+ G D++ +AK+G GKTA FV+  LQQ      ++ AL+L  TRELA Q          +L  ++  V  GG +++   D+L+ N+   ++VGTPGR+L LA  K   L     F++DE DKML
Sbjct:   32 FEDFPLKRELLMGIFEAGFEKPSPVQEESIPMALAGRDILARAKNGTGKTASFVIPCLQQARPKVNKIQALILVPTRELALQTSQVVRTLGKHL-GLQCMVTTGGTSLR--DDILRLNDPVHVLVGTPGRVLDLASRKVADLSECPLFVMDEADKML 185          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: IF4A2_MACFA (Eukaryotic initiation factor 4A-II OS=Macaca fascicularis GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.052e-25
Identity = 71/156 (45.51%), Postives = 86/156 (55.13%), Query Frame = 2
Query:  269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736
            F D  LK  LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E+   +  ALVL  TRELA QI         Y+     A   GG N++     L+ E P IVVGTPGR+  +   + LS K ++ F+LDE D ML
Sbjct:   36 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADGML 190          
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: RRP3_CRYNE (ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans GN=RRP3 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.206e-25
Identity = 64/162 (39.51%), Postives = 98/162 (60.49%), Query Frame = 2
Query:  257 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDKDLSLKNVRHFILDECDKMLE 739
            H+  F D  + PEL RA    GF+ PS++Q E IP A+ G D+I  A++G GKTA F L  LQ    NP    ALVL  TRELAYQI  +     + +  ++ AV  GG+++ + + +  ++ P I+V TPGR++  L   K  SLK++++ ++DE D++L+
Sbjct:   36 HNKTFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENPQPFFALVLAPTRELAYQISQQVTSLGSGI-GVRTAVLVGGMDM-MSQSIALSKRPHIIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLD 195          
The following BLAST results are available for this feature:
BLAST of CN185812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A1_RABIT2.337e-2544.23Eukaryotic initiation factor 4A-I (Fragment) OS=Or... [more]
IF4A1_PANTR2.337e-2544.23Eukaryotic initiation factor 4A-I OS=Pan troglodyt... [more]
IF4A1_MOUSE2.337e-2544.23Eukaryotic initiation factor 4A-I OS=Mus musculus ... [more]
IF4A1_MACFA2.337e-2544.23Eukaryotic initiation factor 4A-I OS=Macaca fascic... [more]
IF4A1_HUMAN2.337e-2544.23Eukaryotic initiation factor 4A-I OS=Homo sapiens ... [more]
IF4A1_BOVIN2.337e-2544.23Eukaryotic initiation factor 4A-I OS=Bos taurus GN... [more]
DHH1_PICST2.337e-2543.31ATP-dependent RNA helicase DHH1 OS=Pichia stipitis... [more]
DHH1_DEBHA2.337e-2543.31ATP-dependent RNA helicase DHH1 OS=Debaryomyces ha... [more]
IF4A2_MACFA3.052e-2545.51Eukaryotic initiation factor 4A-II OS=Macaca fasci... [more]
RRP3_CRYNE5.206e-2539.51ATP-dependent rRNA helicase RRP3 OS=Cryptococcus n... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O12_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185812 ID=CN185812; Name=CN185812; organism=Citrus sinensis; type=EST; length=752bp
GATGGCGAATTCTCTCCACTTTCAAATCTTTTTCTCCTTTTATTTTGGCT
AATTATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCC
CAACCGTTTATTCGAATACTGGCAGGAATGGGAGAGACAAGAGACAACGA
GTACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCG
ATTCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTT
GGTATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCT
TCGTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATG
AATGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAA
TCAGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAAC
AGAGCTAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAG
AGTTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTG
CCTGATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCA
CAAAGATTTGCTGAAAAACGAATGTCCCCAAATTGTTGTCGGGACTCCTG
GAAGGATACTAGCTCTTGCTAGAGATAAAGACCTCTCTTTGAAGAATGTG
AGGCATTTTATCCTTGATGAATGCGATAAGATGCTGGAATCTCTTGACAT
GA
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