CN185812
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DEAD_ECOL6 (Cold-shock DEAD box protein A OS=Escherichia coli O6 GN=deaD PE=3 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24 Identity = 64/156 (41.03%), Postives = 85/156 (54.49%), Query Frame = 2 Query: 269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736 F D LK +L A+ D G+E PS +Q ECIP + G DV+ A++G GKTA F L LQ + LVL TRELA Q+ FS ++ + V YGG + L+ + PQIVVGTPGR+L + L L + +LDE D+ML Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR-QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEML 162
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DEAD_ECO57 (Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD PE=3 SV=3) HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24 Identity = 64/156 (41.03%), Postives = 85/156 (54.49%), Query Frame = 2 Query: 269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736 F D LK +L A+ D G+E PS +Q ECIP + G DV+ A++G GKTA F L LQ + LVL TRELA Q+ FS ++ + V YGG + L+ + PQIVVGTPGR+L + L L + +LDE D+ML Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR-QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEML 162
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DEAD_KLEPN (Cold-shock DEAD box protein A OS=Klebsiella pneumoniae GN=deaD PE=3 SV=3) HSP 1 Score: 110.538 bits (275), Expect = 9.819e-24 Identity = 63/156 (40.38%), Postives = 84/156 (53.85%), Query Frame = 2 Query: 269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736 F D LK +L A+ D G+E PS +Q ECIP + G DV+ A++G GKTA F L L + LVL TRELA Q+ FS ++ + V YGG + L+ + PQIVVGTPGR+L + L L + +LDE D+ML Sbjct: 8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALR-QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEML 162
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DEAD_BUCBP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=deaD PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 9.819e-24 Identity = 64/156 (41.03%), Postives = 86/156 (55.13%), Query Frame = 2 Query: 269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736 F F L ++ A+ D G+ PS +Q CIP I G DV+ A++G GKTA F L L +L+ LVL TRELA Q+ F FS L + V YGG + L+ + PQI+VGTPGR+L + + LSL N+ +LDE D+ML Sbjct: 8 FSSFGLNSCIITALNDIGYVQPSPIQAACIPYLIKGKDVLGMAQTGSGKTAAFALPLLHNIKLDVRVPQILVLTPTRELAVQVAEAFSNFSKKLIGVHVLALYGGQRYDLQLKSLR-KGPQIIVGTPGRLLDHLKRRTLSLSNLHSLVLDEADEML 162
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: RH12_ORYSJ (DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica GN=Os10g0503700 PE=2 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 1.282e-23 Identity = 63/157 (40.13%), Postives = 92/157 (58.60%), Query Frame = 2 Query: 269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736 F D+ LK ELL I + GFE PS +Q E IP A+ G D++ +AK+G GKTA F + L++ + + ++L TRELA Q + YL +I+V V GG ++K D+++ P ++VGTPGRIL L R LK+ ++DE DK+L Sbjct: 149 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGKYL-NIQVMVSTGGTSLK--DDIMRLYQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLL 302
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: FAL1_YEAST (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae GN=FAL1 PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.282e-23 Identity = 67/160 (41.88%), Postives = 90/160 (56.25%), Query Frame = 2 Query: 260 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH-KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736 SS F LK +LLR I GFE PS +Q I Q I G DVI QA+SG GKTA F + LQ +L + AL+L TRELA QI + Y+ ++ GG +K K + K+ C Q V GTPGR+L + + + L +NV+ +LDE D++L Sbjct: 22 SSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGC-QAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELL 179
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: FAL1_YEAS7 (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain YJM789) GN=FAL1 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.282e-23 Identity = 67/160 (41.88%), Postives = 90/160 (56.25%), Query Frame = 2 Query: 260 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH-KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736 SS F LK +LLR I GFE PS +Q I Q I G DVI QA+SG GKTA F + LQ +L + AL+L TRELA QI + Y+ ++ GG +K K + K+ C Q V GTPGR+L + + + L +NV+ +LDE D++L Sbjct: 22 SSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGC-QAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELL 179
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DHH1_BOTFB (ATP-dependent RNA helicase dhh1 OS=Botryotinia fuckeliana (strain B05.10) GN=dhh1 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.282e-23 Identity = 65/157 (41.40%), Postives = 90/157 (57.32%), Query Frame = 2 Query: 269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736 F DF +K ELL I + G+E PS +Q E IP A+ G D++ +AK+G GKTA FV+ L++ +V L+L TRELA Q + +L I V V GG ++ D+L+ + P I+VGTPGRIL LA L F++DE DK+L Sbjct: 49 FEDFSIKRELLMGIFEMGYEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERINPKNTKVQCLILVPTRELALQTSQVCKTLGQHL-GINVMVTTGGTTLR--DDILRLQEPVHIIVGTPGRILDLAGKNVADLSECNMFVMDEADKLL 202
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: DHH1_CANAL (ATP-dependent RNA helicase DHH1 OS=Candida albicans GN=DHH1 PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.675e-23 Identity = 65/157 (41.40%), Postives = 92/157 (58.60%), Query Frame = 2 Query: 269 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736 F DF LK ELL I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA F++ LQ + +V AL+L TRELA Q ++ + V GG +++ D+++ P I+VGTPGR+L LA K + L F++DE DKML Sbjct: 32 FEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQVVRTLGKHV-GTQCMVTTGGTSLR--DDIVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKML 185
BLAST of CN185812 vs. ExPASy Swiss-Prot
Match: IF4A_SCLS1 (ATP-dependent RNA helicase eIF4A OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif1 PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.857e-23 Identity = 63/151 (41.72%), Postives = 90/151 (59.60%), Query Frame = 2 Query: 284 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 736 LKPELLR + GFE PS +Q I I G DVI QA+SG GKTA F +S LQ+ + N Q AL+L TRELA QI ++ +++ GG +++ L+ + PQ+VVGTPGR+ + + + L +++ F+LDE D+ML Sbjct: 32 LKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFM-NVECHACIGGTSVRDDMKALQ-DGPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEML 180 The following BLAST results are available for this feature:
BLAST of CN185812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185812 ID=CN185812; Name=CN185812; organism=Citrus sinensis; type=EST; length=752bpback to top |