CN185811

Overview
NameCN185811
Unique NameCN185811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: SUB2_AJECN (ATP-dependent RNA helicase SUB2 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=SUB2 PE=3 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 6.180e-56
Identity = 105/152 (69.08%), Postives = 128/152 (84.21%), Query Frame = -1
Query:  339 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 791
            KNRKLN+LLD+L+FNQV+IFVKS  RA+EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGLAI+FVSS  D ++L  ++ RFEV + E P+  +D+S YM
Sbjct:  290 KNRKLNELLDSLEFNQVIIFVKSTQRASELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVSSEQDQEVLKDIEKRFEVALPEYPQGGVDSSAYM 441          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: SUB2_NEOFI (ATP-dependent RNA helicase sub2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sub2 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.072e-56
Identity = 106/152 (69.74%), Postives = 128/152 (84.21%), Query Frame = -1
Query:  339 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 791
            KNRKLN+LLD+L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVSS  D  +L +++ RFEV + E PE  +D+STYM
Sbjct:  289 KNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEEDEKVLKEIEKRFEVALPEYPEGGVDSSTYM 440          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: SUB2_MAGGR (ATP-dependent RNA helicase SUB2 OS=Magnaporthe grisea GN=SUB2 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.072e-56
Identity = 107/154 (69.48%), Postives = 126/154 (81.82%), Query Frame = -1
Query:  333 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYMPS 791
            KNRKLN+LLD L FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYDMP  AD+YLHRVGRAGRFGTKGLA++FV++  D ++L  ++ RFEV I E P+  ID STYM S
Sbjct:  283 KNRKLNELLDDLQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLAVSFVTNDQDKEVLTAIEKRFEVPIPEFPKDGIDASTYMAS 436          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: SUB2_ASPFU (ATP-dependent RNA helicase sub2 OS=Aspergillus fumigatus GN=sub2 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.072e-56
Identity = 106/152 (69.74%), Postives = 128/152 (84.21%), Query Frame = -1
Query:  339 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 791
            KNRKLN+LLD+L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVSS  D  +L +++ RFEV + E PE  +D+STYM
Sbjct:  296 KNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEEDEKVLKEIEKRFEVALPEYPEGGVDSSTYM 447          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: SUB2_PICST (ATP-dependent RNA helicase SUB2 OS=Pichia stipitis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.054e-55
Identity = 103/152 (67.76%), Postives = 126/152 (82.89%), Query Frame = -1
Query:  339 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 791
            KNRKL+DLLD+L+FNQV+IFVKS  RA ELNKLL  CNFPSI +HSG+ QEER+ RY+ FKE NKRI V+TD+ GRGIDIER+N+ INYD+P+ AD YLHRVGRAGRFGTKGLAI+ V S  D ++L ++Q+RF+V I E PE+ +D STYM
Sbjct:  280 KNRKLSDLLDSLEFNQVIIFVKSTQRANELNKLLCSCNFPSIAVHSGLPQEERIERYRSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAISLVGSKEDEEVLEKIQSRFDVKITEFPEEGVDPSTYM 431          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DDX39_RAT (ATP-dependent RNA helicase DDX39 OS=Rattus norvegicus GN=Ddx39 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.054e-55
Identity = 108/151 (71.52%), Postives = 127/151 (84.11%), Query Frame = -1
Query:  339 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 791
            KNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM+QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTKGLA+TFVS  +D+ ILN VQ RFEV++ ELPE+ID STY+
Sbjct:  273 KNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYI 423          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DDX39_MOUSE (ATP-dependent RNA helicase DDX39 OS=Mus musculus GN=Ddx39 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.054e-55
Identity = 108/151 (71.52%), Postives = 127/151 (84.11%), Query Frame = -1
Query:  339 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 791
            KNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM+QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTKGLA+TFVS  +D+ ILN VQ RFEV++ ELPE+ID STY+
Sbjct:  273 KNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYI 423          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DDX39_HUMAN (ATP-dependent RNA helicase DDX39 OS=Homo sapiens GN=DDX39 PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 1.054e-55
Identity = 108/151 (71.52%), Postives = 127/151 (84.11%), Query Frame = -1
Query:  339 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 791
            KNRKL DLLD L+FNQV+IFVKSV R   L +LLVE NFP+I IH GM+QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV++ ELPE+ID STY+
Sbjct:  273 KNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYI 423          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: SUB2_ASPCL (ATP-dependent RNA helicase sub2 OS=Aspergillus clavatus GN=sub2 PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.798e-55
Identity = 105/152 (69.08%), Postives = 128/152 (84.21%), Query Frame = -1
Query:  339 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 791
            KNRKLN+LLD+L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVS+  D  +L +++ RFEV + E PE  +D+STYM
Sbjct:  289 KNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSNEDDEKVLKEIEKRFEVALPEYPEGGVDSSTYM 440          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: SUB2_COCIM (ATP-dependent RNA helicase SUB2 OS=Coccidioides immitis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.349e-55
Identity = 107/152 (70.39%), Postives = 125/152 (82.24%), Query Frame = -1
Query:  339 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 791
            KNRKLN+LLD L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYDMP  AD+YLHRVGRAGRFGTKGL+I+FVSS  D   L  ++ RFEV + E PE+ +D STYM
Sbjct:  291 KNRKLNELLDNLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLSISFVSSEDDMKTLKDIEKRFEVALPEYPEEGVDASTYM 442          
The following BLAST results are available for this feature:
BLAST of CN185811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUB2_AJECN6.180e-5669.08ATP-dependent RNA helicase SUB2 OS=Ajellomyces cap... [more]
SUB2_NEOFI8.072e-5669.74ATP-dependent RNA helicase sub2 OS=Neosartorya fis... [more]
SUB2_MAGGR8.072e-5669.48ATP-dependent RNA helicase SUB2 OS=Magnaporthe gri... [more]
SUB2_ASPFU8.072e-5669.74ATP-dependent RNA helicase sub2 OS=Aspergillus fum... [more]
SUB2_PICST1.054e-5567.76ATP-dependent RNA helicase SUB2 OS=Pichia stipitis... [more]
DDX39_RAT1.054e-5571.52ATP-dependent RNA helicase DDX39 OS=Rattus norvegi... [more]
DDX39_MOUSE1.054e-5571.52ATP-dependent RNA helicase DDX39 OS=Mus musculus G... [more]
DDX39_HUMAN1.054e-5571.52ATP-dependent RNA helicase DDX39 OS=Homo sapiens G... [more]
SUB2_ASPCL1.798e-5569.08ATP-dependent RNA helicase sub2 OS=Aspergillus cla... [more]
SUB2_COCIM2.349e-5570.39ATP-dependent RNA helicase SUB2 OS=Coccidioides im... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185811 ID=CN185811; Name=CN185811; organism=Citrus sinensis; type=EST; length=791bp
TTTTTTTTTTTTTTTTTGGTGTCTAAGAATCTAATCGATCCATAGTGCAA
TAAAAATTATCTCACAAGGAACTCTAATACAAGCCAAGGTACCAGTTGAA
TAACATTCCCAATAGCAGCAGTACCCAGAAGGTATTAAAAGGCTACAAAT
CCCAAAAACAAGAAAAGGCAGCGTAAAACCACAAAATAGAGGGATCCATC
TGACAAATCTCCAAGGCAACATATATGAAAGCCATTGGACTTCATCTAAA
GAAACAAATACATAAAGGGCCTTCAGCACCCTGCTTCCACATGCGCCTCA
AATTTTCCACATCAGAGAACAGATCTCCACTATGATGGCATGTATGTAGA
TGTATCAATCTGCTCAGGAAGCTCCTTTATATCTACTTCAAACCTTGCCT
GAACCTGATTGAGAATATCGGAGTCTGAAGCAGATGATACAAAAGTAATT
GCAAGGCCCTTGGTGCCAAACCTACCAGCTCTACCAACCCTGTGCAGATA
AGTATCAGCAGAATCTGGCATGTCATAATTGATGACAATGTTGACACGCT
CAATGTCAATTCCCCTACCAACCAAATCTGTGGCCACAAGAATCCTCTTG
TTCCCCTCCTTGAAACCTTTGTAACGCGTCAACCTTTCTTCTTGGGACAT
GCCAGAATGGATGCATATAGAAGGAAAATTGCATTCTACAAGTAACTTGT
TTAACTCCGCTGCTCGGCTAACACTTTTGACAAAGATAACAACTTGATTA
AAGTCCAATGCATCAAGGAGATCATTCAACTTCCGATTTTT
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