CN185811

Overview
NameCN185811
Unique NameCN185811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: SUB2_ASPOR (ATP-dependent RNA helicase sub2 OS=Aspergillus oryzae GN=sub2 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.067e-55
Identity = 105/152 (69.08%), Postives = 127/152 (83.55%), Query Frame = -1
Query:  339 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 791
            KNRKLN+LLD+L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVS+  D  +L  ++ RFEV + E PE  +D+STYM
Sbjct:  289 KNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSNEEDEKVLKDIEKRFEVALPEYPEGGVDSSTYM 440          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: SUB2_ASPNC (ATP-dependent RNA helicase sub2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sub2 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.067e-55
Identity = 105/152 (69.08%), Postives = 127/152 (83.55%), Query Frame = -1
Query:  339 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 791
            KNRKLN+LLD+L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVS+  D  +L  ++ RFEV + E PE  +D+STYM
Sbjct:  288 KNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSTEDDEKVLKDIEKRFEVALPEYPEGGVDSSTYM 439          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: UAP56_DROME (ATP-dependent RNA helicase WM6 OS=Drosophila melanogaster GN=Hel25E PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.232e-55
Identity = 107/151 (70.86%), Postives = 127/151 (84.11%), Query Frame = -1
Query:  339 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 791
            KN+KL +LLD L+FNQVVIFVKSV R   L++LL E NFP+I IH GM+QEERL RY+ FK+  KRILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN+VQ RF+V+I ELPE+ID STY+
Sbjct:  271 KNKKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFDVNISELPEEIDLSTYI 421          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: UAP56_RAT (Spliceosome RNA helicase Bat1 OS=Rattus norvegicus GN=Bat1 PE=2 SV=3)

HSP 1 Score: 213.001 bits (541), Expect = 1.522e-54
Identity = 107/151 (70.86%), Postives = 125/151 (82.78%), Query Frame = -1
Query:  339 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 791
            KNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNI  NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct:  274 KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: UAP56_PONAB (Spliceosome RNA helicase BAT1 OS=Pongo abelii GN=BAT1 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.522e-54
Identity = 107/151 (70.86%), Postives = 125/151 (82.78%), Query Frame = -1
Query:  339 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 791
            KNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNI  NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct:  274 KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: UAP56_PIG (Spliceosome RNA helicase BAT1 OS=Sus scrofa GN=BAT1 PE=3 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.522e-54
Identity = 107/151 (70.86%), Postives = 125/151 (82.78%), Query Frame = -1
Query:  339 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 791
            KNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNI  NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct:  274 KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: UAP56_PANTR (Spliceosome RNA helicase BAT1 OS=Pan troglodytes GN=BAT1 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.522e-54
Identity = 107/151 (70.86%), Postives = 125/151 (82.78%), Query Frame = -1
Query:  339 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 791
            KNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNI  NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct:  274 KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: UAP56_MOUSE (Spliceosome RNA helicase Bat1 OS=Mus musculus GN=Bat1 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.522e-54
Identity = 107/151 (70.86%), Postives = 125/151 (82.78%), Query Frame = -1
Query:  339 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 791
            KNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNI  NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct:  274 KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: UAP56_MACMU (Spliceosome RNA helicase BAT1 OS=Macaca mulatta GN=BAT1 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.522e-54
Identity = 107/151 (70.86%), Postives = 125/151 (82.78%), Query Frame = -1
Query:  339 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 791
            KNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNI  NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct:  274 KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: UAP56_HUMAN (Spliceosome RNA helicase BAT1 OS=Homo sapiens GN=BAT1 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.522e-54
Identity = 107/151 (70.86%), Postives = 125/151 (82.78%), Query Frame = -1
Query:  339 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 791
            KNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNI  NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct:  274 KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424          
The following BLAST results are available for this feature:
BLAST of CN185811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUB2_ASPOR3.067e-5569.08ATP-dependent RNA helicase sub2 OS=Aspergillus ory... [more]
SUB2_ASPNC3.067e-5569.08ATP-dependent RNA helicase sub2 OS=Aspergillus nig... [more]
UAP56_DROME5.232e-5570.86ATP-dependent RNA helicase WM6 OS=Drosophila melan... [more]
UAP56_RAT1.522e-5470.86Spliceosome RNA helicase Bat1 OS=Rattus norvegicus... [more]
UAP56_PONAB1.522e-5470.86Spliceosome RNA helicase BAT1 OS=Pongo abelii GN=B... [more]
UAP56_PIG1.522e-5470.86Spliceosome RNA helicase BAT1 OS=Sus scrofa GN=BAT... [more]
UAP56_PANTR1.522e-5470.86Spliceosome RNA helicase BAT1 OS=Pan troglodytes G... [more]
UAP56_MOUSE1.522e-5470.86Spliceosome RNA helicase Bat1 OS=Mus musculus GN=B... [more]
UAP56_MACMU1.522e-5470.86Spliceosome RNA helicase BAT1 OS=Macaca mulatta GN... [more]
UAP56_HUMAN1.522e-5470.86Spliceosome RNA helicase BAT1 OS=Homo sapiens GN=B... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185811 ID=CN185811; Name=CN185811; organism=Citrus sinensis; type=EST; length=791bp
TTTTTTTTTTTTTTTTTGGTGTCTAAGAATCTAATCGATCCATAGTGCAA
TAAAAATTATCTCACAAGGAACTCTAATACAAGCCAAGGTACCAGTTGAA
TAACATTCCCAATAGCAGCAGTACCCAGAAGGTATTAAAAGGCTACAAAT
CCCAAAAACAAGAAAAGGCAGCGTAAAACCACAAAATAGAGGGATCCATC
TGACAAATCTCCAAGGCAACATATATGAAAGCCATTGGACTTCATCTAAA
GAAACAAATACATAAAGGGCCTTCAGCACCCTGCTTCCACATGCGCCTCA
AATTTTCCACATCAGAGAACAGATCTCCACTATGATGGCATGTATGTAGA
TGTATCAATCTGCTCAGGAAGCTCCTTTATATCTACTTCAAACCTTGCCT
GAACCTGATTGAGAATATCGGAGTCTGAAGCAGATGATACAAAAGTAATT
GCAAGGCCCTTGGTGCCAAACCTACCAGCTCTACCAACCCTGTGCAGATA
AGTATCAGCAGAATCTGGCATGTCATAATTGATGACAATGTTGACACGCT
CAATGTCAATTCCCCTACCAACCAAATCTGTGGCCACAAGAATCCTCTTG
TTCCCCTCCTTGAAACCTTTGTAACGCGTCAACCTTTCTTCTTGGGACAT
GCCAGAATGGATGCATATAGAAGGAAAATTGCATTCTACAAGTAACTTGT
TTAACTCCGCTGCTCGGCTAACACTTTTGACAAAGATAACAACTTGATTA
AAGTCCAATGCATCAAGGAGATCATTCAACTTCCGATTTTT
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