CN185811

Overview
NameCN185811
Unique NameCN185811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DRS1_YEAS7 (ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DRS1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.645e-16
Identity = 44/114 (38.60%), Postives = 64/114 (56.14%), Query Frame = -1
Query:  426 LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 767
            LD     ++V+FV     A  L  ++         +H  ++QE+RL     FK     +L+ TDL  RG+DI ++ +VINYDMP S + YLHRVGR  R G +G ++TFV  +S
Sbjct:  476 LDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESS 589          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DED1_SCHPO (ATP-dependent RNA helicase ded1 OS=Schizosaccharomyces pombe GN=ded1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.645e-16
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = -1
Query:  441 VIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 740
            +IFV++   A  L   L+  NFP+  IH   +Q ER    + F+ G   I+VAT +  RG+DI  V  VINYD+P   D Y+HR+GR GR G  G A+ F
Sbjct:  434 LIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAF 533          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DED1_PHANO (ATP-dependent RNA helicase DED1 OS=Phaeosphaeria nodorum GN=DED1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.645e-16
Identity = 46/117 (39.32%), Postives = 63/117 (53.85%), Query Frame = -1
Query:  441 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 791
            K   L D+L        +IFV++   A  L+  L+   FP+  IH   +Q ER    + F+ G   ILVAT +  RG+DI  V  V+NYD+P   D Y+HR+GR GR G  G+A  F
Sbjct:  447 KRSVLLDILHTHGAGLSLIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRSGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAF 563          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DED1_EMENI (ATP-dependent RNA helicase ded1 OS=Emericella nidulans GN=ded1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.645e-16
Identity = 43/100 (43.00%), Postives = 59/100 (59.00%), Query Frame = -1
Query:  441 VIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 740
            +IFV++   A  L++ L+   FP+  IH   +Q ER    + F+ G   ILVAT +  RG+DI  V  VINYD+P   D Y+HR+GR GR G  G+A  F
Sbjct:  450 LIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAF 549          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DEAD_MYCTU (Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis GN=deaD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.645e-16
Identity = 41/115 (35.65%), Postives = 68/115 (59.13%), Query Frame = -1
Query:  435 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 779
            L  +L+   F  +++FV++     E+ + L    F +  I   + Q +R       ++G+  ILVATD+  RG+D+ER++ V+NYD+P   ++Y+HR+GR GR G  G A+ FVS
Sbjct:  241 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVS 355          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DDX25_MOUSE (ATP-dependent RNA helicase DDX25 OS=Mus musculus GN=Ddx25 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.645e-16
Identity = 47/153 (30.72%), Postives = 86/153 (56.21%), Query Frame = -1
Query:  354 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP------DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL-PEQID 791
            K + L ++   +   Q +IF ++   A  L   +++       +   ++ E+R +  + F++G +++L+ T++  RGID+++V IV+N+D+P         +TYLHR+GR GRFG KGLA   +       +L ++Q  F  +IK+L PE +D
Sbjct:  326 KYQALCNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQSEEPDYETYLHRIGRTGRFGKKGLAFNMI-EVDKLPLLMKIQDHFNSNIKQLDPEDMD 477          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DDX23_DICDI (ATP-dependent RNA helicase ddx23 OS=Dictyostelium discoideum GN=helB2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.645e-16
Identity = 42/110 (38.18%), Postives = 65/110 (59.09%), Query Frame = -1
Query:  414 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDI 743
            ++IFV        +  +L EC      +HSG SQE+R    +GFK+    +L+AT +  RGI ++ V  VIN+D+P + + Y HR+GR GR G+ GLA +F+   +D D+
Sbjct:  684 IIIFVNKKKHCDIIAPVLEECRVSYTILHSGRSQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGRTGRAGSAGLASSFI---TDKDV 790          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DBP8_PHANO (ATP-dependent RNA helicase DBP8 OS=Phaeosphaeria nodorum GN=DBP8 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.645e-16
Identity = 44/128 (34.38%), Postives = 71/128 (55.47%), Query Frame = -1
Query:  360 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 743
            V+IF      A  L  +L   +     +HSG+ Q++R++    F+    RILVATD+  RG+DI  V +V+N+D+P   D Y+HRVGR  R G  G ++TF+    D +++  ++ R    + E  E+
Sbjct:  334 VIIFCNRTKTATLLEYMLRMLDHRVTALHSGLKQQDRISNLARFRAQAARILVATDVAARGLDIPEVGLVVNFDVPRDPDDYIHRVGRTARAGRPGNSVTFIGQ-RDVELVLAIEERVGGKMSEFEEE 460          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DBP5_LODEL (ATP-dependent RNA helicase DBP5 OS=Lodderomyces elongisporus GN=DBP5 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.645e-16
Identity = 45/139 (32.37%), Postives = 76/139 (54.68%), Query Frame = -1
Query:  381 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSAD------TYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVD 779
            L +L   L     +IFV+  + A  L   + E       +H G+   +R      F+EG  ++L+ T+++ RGIDI  V++V+NYD+P + +      TYLHR+GR GRFG  G++++FV++  D   L  +   F ++
Sbjct:  345 LCELYGLLTIGSSIIFVEQKATADSLYLRMKEEGHTVSILHGGLEVADRDRLIDDFREGRSKVLITTNVLARGIDIATVSMVVNYDLPRTKEGRPDPSTYLHRIGRTGRFGRVGVSVSFVANEKDYQTLKYIAEYFGIE 483          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DBP2_CRYNE (ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans GN=DBP2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.645e-16
Identity = 47/135 (34.81%), Postives = 71/135 (52.59%), Query Frame = -1
Query:  342 QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 746
            +V+IFV +   A +L K L    +P++ IH    Q ER      FK G   I++ATD+  RG+D+  +  VINYD P++ + Y+HR+GR GR G KG + T+ +  +       VQ   E      PE  + + Y
Sbjct:  358 KVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKAARELVQILRESKADIPPELEEMAMY 492          
The following BLAST results are available for this feature:
BLAST of CN185811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DRS1_YEAS71.645e-1638.60ATP-dependent RNA helicase DRS1 OS=Saccharomyces c... [more]
DED1_SCHPO1.645e-1643.00ATP-dependent RNA helicase ded1 OS=Schizosaccharom... [more]
DED1_PHANO1.645e-1639.32ATP-dependent RNA helicase DED1 OS=Phaeosphaeria n... [more]
DED1_EMENI1.645e-1643.00ATP-dependent RNA helicase ded1 OS=Emericella nidu... [more]
DEAD_MYCTU1.645e-1635.65Cold-shock DEAD box protein A homolog OS=Mycobacte... [more]
DDX25_MOUSE1.645e-1630.72ATP-dependent RNA helicase DDX25 OS=Mus musculus G... [more]
DDX23_DICDI1.645e-1638.18ATP-dependent RNA helicase ddx23 OS=Dictyostelium ... [more]
DBP8_PHANO1.645e-1634.38ATP-dependent RNA helicase DBP8 OS=Phaeosphaeria n... [more]
DBP5_LODEL1.645e-1632.37ATP-dependent RNA helicase DBP5 OS=Lodderomyces el... [more]
DBP2_CRYNE1.645e-1634.81ATP-dependent RNA helicase DBP2-A OS=Cryptococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185811 ID=CN185811; Name=CN185811; organism=Citrus sinensis; type=EST; length=791bp
TTTTTTTTTTTTTTTTTGGTGTCTAAGAATCTAATCGATCCATAGTGCAA
TAAAAATTATCTCACAAGGAACTCTAATACAAGCCAAGGTACCAGTTGAA
TAACATTCCCAATAGCAGCAGTACCCAGAAGGTATTAAAAGGCTACAAAT
CCCAAAAACAAGAAAAGGCAGCGTAAAACCACAAAATAGAGGGATCCATC
TGACAAATCTCCAAGGCAACATATATGAAAGCCATTGGACTTCATCTAAA
GAAACAAATACATAAAGGGCCTTCAGCACCCTGCTTCCACATGCGCCTCA
AATTTTCCACATCAGAGAACAGATCTCCACTATGATGGCATGTATGTAGA
TGTATCAATCTGCTCAGGAAGCTCCTTTATATCTACTTCAAACCTTGCCT
GAACCTGATTGAGAATATCGGAGTCTGAAGCAGATGATACAAAAGTAATT
GCAAGGCCCTTGGTGCCAAACCTACCAGCTCTACCAACCCTGTGCAGATA
AGTATCAGCAGAATCTGGCATGTCATAATTGATGACAATGTTGACACGCT
CAATGTCAATTCCCCTACCAACCAAATCTGTGGCCACAAGAATCCTCTTG
TTCCCCTCCTTGAAACCTTTGTAACGCGTCAACCTTTCTTCTTGGGACAT
GCCAGAATGGATGCATATAGAAGGAAAATTGCATTCTACAAGTAACTTGT
TTAACTCCGCTGCTCGGCTAACACTTTTGACAAAGATAACAACTTGATTA
AAGTCCAATGCATCAAGGAGATCATTCAACTTCCGATTTTT
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